bacannot

(โ˜… 110)

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

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Download Latest Version (.zip)
  • .gitattributes
  • .gitignore
  • .gitpod.yml
  • .readthedocs.yml
  • .zenodo.json
  • example_samplesheet.yaml
  • LICENSE
  • main.nf
  • mkdocs.yml
  • nextflow.config
  • nextflow_schema.json
  • README.md

# Installation Guide

1. Get the code
git clone https://github.com/fmalmeida/bacannot

Downloads the entire project code from GitHub to your computer.

cd bacannot

Moves into the project folder you just downloaded.

2. Official Install Script

Easy Recommended
Prerequisites
  • Python 3 Python is required to use pip.
pip install nf-core

Installs the package published on PyPI directly โ€” no need to clone the source.

curl -s https://get.nextflow.io | bash

Downloads and runs the official install script in one line โ€” this handles the full setup automatically.

โœ… After installing, open a new terminal and run the program's version command (e.g. --version) to confirm it worked.

Pulled directly from this repo's README.

3. Docker

Easy
Prerequisites
  • Git Needed to download the project code from GitHub.
  • Docker Desktop Needed to build and run containers. Install it and keep it running in the background.
nextflow run fmalmeida/bacannot -profile docker --help

Type this command into your terminal and run it.

โœ… Run docker compose ps to check the containers are Up. If the README mentions a port, open http://localhost:PORT in your browser.

Pulled directly from this repo's README.

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