earlham-galaxytools
Galaxy tools and workflows developed at the Earlham Institute
File Explorer
- ci.yaml
- pr.yaml
- slash.yaml
- styler.R
- Mus_musculus.GRCm38.cds.first100.fa
- Mus_musculus.GRCm38.cds.longest.fa
- .shed.yml
- ensembl_longest_cds_per_gene.py
- ensembl_longest_cds_per_gene.xml
- cross-validation_stats.txt
- edges-for-cross-validation.txt
- enrichment-GO.txt
- enrichment-GO_BP.pdf
- enrichment-GO_CC.pdf
- enrichment-GO_MF.pdf
- expressionData.txt
- geneList.txt
- groups.txt
- gse-GO.txt
- gse-KEGG.txt
- interactionMatrix.txt
- MultiPEN-feature-selection_config.txt
- MultiPEN-performance_feature-selection_lambda0.0001.txt
- MultiPEN-Rankings_lambda0.0001-onlyGenes.txt
- MultiPEN-Rankings_lambda0.0001.txt
- MultiPEN-Rankings_lambda0.0001_higher-in-cases.txt
- MultiPEN-Rankings_lambda0.0001_higher-in-control.txt
- MultiPEN-vts_lambda0.0001.txt
- networkFromGeneList.txt
- sampleClass.txt
- MultiPEN-cross-validation.xml
- MultiPEN-enrichment-GO.xml
- MultiPEN-enrichment-KEGG.xml
- MultiPEN-feature-selection.xml
- MultiPEN-StringDBNetwork.xml
- rsat_filter_snps_out.tabular
- rsat_output.tabular
- snp_positions.tabular
- .lint_skip
- .shed.yml
- rsat_filter_snps.py
- rsat_filter_snps.xml
- All_cell_lines.AIRs.txt
- miR_Family_info_sample.txt
- miR_for_context_scores.sample.txt
- ORF_8mer_counts_sample.txt
- ORF_Sequences_sample.txt
- Targets.BL_PCT.context_scores.txt
- targetscan_70_output.BL_PCT.txt
- targetscan_70_output.txt
- UTR_Sequences_sample.txt
- UTRs_median_BLs_bins.txt
- targetscan.xml
- gstf.ga
- Dockerfile
- library_data.yml
- readme.md
- tools.yml
- 1ha3A.pdb
- 1yr8A.pdb
- 3ec1A.pdb
- query.lst
- templ.lst
- .shed.yml
- apoc.xml
- input.tabular
- output.tabular
- output2.tabular
- .shed.yml
- blast_parser.py
- blast_parser.xml
- input.txt
- .shed.yml
- get_feature_info.py
- get_feature_info.xml
- get_genetree.py
- get_genetree.xml
- get_sequences.py
- get_sequences.xml
- macros.xml
- 11_genetree.nhx
- 11_homology.csv
- 11_homology.tabular
- 12_genetree.nhx
- 13_genetree.nhx
- 14_genetree.nhx
- 21_genetree.nhx
- 22_genetree.nhx
- 23_genetree.nhx
- 24_genetree.nhx
- 25_genetree.nhx
- 31_genetree.nhx
- 32_genetree.nhx
- 33_genetree.nhx
- 34_genetree.nhx
- 41_genetree.nhx
- 42_genetree.nhx
- 43_genetree.nhx
- 44_genetree.nhx
- genetree.nhx
- lineage-compress-lower.txt
- lineage-compress.txt
- lineage-full.txt
- lineage-wid.txt
- lineage.txt
- species.txt
- species_ids.txt
- speciestree.nhx
- taxdump.sqlite
- taxdump.tar.gz
- test.nhx
- test.tsv
- tree1.nhx
- tree1_ladder.nhx
- tree1_ogA.nhx
- tree1_pruneAC.nhx
- tree1_pruneACpreserve.nhx
- tree1_unroot.nhx
- tree1_unroot_resolve.nhx
- tree2.nhx
- tree2_sort.nhx
- tree3.nhx
- tree3_stand.nhx
- .shed.yml
- ete_gene_cnv.py
- ete_gene_cnv.xml
- ete_genetree_splitter.py
- ete_genetree_splitter.xml
- ete_homology_classifier.py
- ete_homology_classifier.xml
- ete_init_taxdb.py
- ete_init_taxdb.xml
- ete_lineage_generator.py
- ete_lineage_generator.xml
- ete_macros.xml
- ete_mod.xml
- ete_species_tree_generator.py
- ete_species_tree_generator.xml
- .lint_skip
- .shed.yml
- export_to_cluster.py
- export_to_cluster.xml
- README.rst
- tool_dependencies.xml
- gafa.mwb
- gafa.png
- gafa.sql
- gafa.svg
- align1.fasta
- align2.fasta
- align3.fasta
- align4.fasta
- gene.sqlite
- test.gafa.sqlite
- tree1.nhx
- tree2.nhx
- tree3.nhx
- tree4.nhx
- .shed.yml
- GAFA.py
- GAFA.xml
- Gblocks_on_data_95.txt
- Gblocks_Results_And_Parameters_on_data_95_html.html
- Gblocks_Selected_Blocks_on_data_95.txt
- nad3.fasta
- .shed.yml
- gblocks.xml
- gstf.mwb
- gstf.png
- gstf.svg
- Caenorhabditis_elegans.WBcel235.87.chromosome.I.shortened.gff3
- Caenorhabditis_elegans.WBcel235.cds.all.shortened.fa
- CDS.fasta
- gene.json
- MGP_PahariEiJ_G0008413.1.gff3
- Mus_pahari.PAHARI_EIJ_v1.1.cds.all.shortened.fa
- test1.fasta
- test1.sqlite
- test1_longest.fasta
- test4.fasta
- test4.sqlite
- test5.ns.fasta
- test5_filtered.fasta
- test6.fasta
- test6.sqlite
- .shed.yml
- gstf_preparation.py
- gstf_preparation.xml
- exam-1.txt
- hcluster_sg1.txt
- hcluster_sg2.txt
- .shed.yml
- hcluster_sg.xml
- 0_output.txt
- 1_output.txt
- 2_output.txt
- 3_output.txt
- discarded.txt
- empty.txt
- hcluster_sg.tabular
- hcluster_sg1.tabular
- hcluster_sg1_0_output.txt
- hcluster_sg1_1_output.txt
- hcluster_sg1_2_output.txt
- hcluster_sg1_3_output.txt
- hcluster_sg1_4_output.txt
- hcluster_sg1_5_output.txt
- hcluster_sg1_6_output.txt
- hcluster_sg1_7_output.txt
- hcluster_sg1_8_output.txt
- .shed.yml
- hcluster_sg_parser.py
- hcluster_sg_parser.xml
- Anh_sample1.fastq.gz
- Anh_sample2.fastq.gz
- Arabidopsis_R1.fastqsanger.gz
- Arabidopsis_R2.fastqsanger.gz
- mapping.txt
- mapping_paired.txt
- all_fasta.loc.sample
- .shed.yml
- lotus2.xml
- tool_data_table_conf.xml.sample
- microrna.fasta
- query.fasta
- raw_output.txt
- tabular_output.txt
- .shed.yml
- miranda.xml
- miranda_parser.py
- count.matrix
- heatmap.pdf
- stats.data
- .lint_skip
- .shed.yml
- plotheatmap.xml
- script.R
- 1sj0_ligand.sd
- 1sj0_rdock.mol2
- 1sj0_rdock.prm
- .shed.yml
- rdock.xml
- gemini_load_input.vcf
- GRCh37_ensembl2UCSC.txt
- replace_chromosome_names_output.vcf
- .lint_skip
- .shed.yml
- replace_chromosome_names.py
- replace_chromosome_names.xml
- ENSCAFP00000021307_SMART_results.json
- ENSCAFP00000021307_SMART_results.txt
- ENSCAFP00000021330_SMART_results.json
- ENSCAFP00000021330_SMART_results.txt
- ENSMUSP00000026013_SMART_results.json
- ENSMUSP00000026013_SMART_results.txt
- ENSMUSP00000040550_SMART_results.json
- ENSMUSP00000040550_SMART_results.txt
- ENSP00000340684_SMART_results.json
- ENSP00000340684_SMART_results.txt
- ENSP00000367309_SMART_results.json
- ENSP00000367309_SMART_results.txt
- ENSPTRP00000037440_SMART_results.json
- ENSPTRP00000037440_SMART_results.txt
- ENSPTRP00000037441_SMART_results.json
- ENSPTRP00000037441_SMART_results.txt
- ENSRNOP00000043466_SMART_results.json
- ENSRNOP00000043466_SMART_results.txt
- ENSRNOP00000063784_SMART_results.json
- ENSRNOP00000063784_SMART_results.txt
- ENSSSCP00000013044_SMART_results.json
- ENSSSCP00000013044_SMART_results.txt
- ENSSSCP00000028353_SMART_results.json
- ENSSSCP00000028353_SMART_results.txt
- seq.fa
- .shed.yml
- smart-domain.pl
- smart_domains.xml
- ligand.pdbqt
- ligand_out.pdbqt
- output_smina
- protein.pdbqt
- .shed.yml
- smina.xml
- ids.txt
- input.fasta
- output1.fasta
- output2.fasta
- output3.fasta_seq
- output3.nhx
- output3.pir_seq
- .shed.yml
- filter_by_fasta_ids.py
- t_coffee.xml
- dna_alignment.fasta
- genetree.nhx
- species.nhx
- .shed.yml
- TreeBest_best.xml
- aequatus.xml
- prototype.js
- controls.js
- popup.js
- readSQLite.js
- sql.js
- worker.js
- worker.sql.js
- aequatus.css
- aequatus-vis
- aequatus.css
- controls.js
- popup.js
- aequatus.mako
- README.md
- CDS.fasta
- gene.json
- gene_family.gafa.sqlite
- species.nhx
- .shed.yml
- finding_orphan_genes.ga
- finding_orphan_genes.png
- GeneFamilies_GeneSeqToFamily.ga
- GeneSeqToFamily.ga
- GeneSeqToFamily.png
- readme.md
- swissprot.ga
- swissprot.png
- tutorial.md
- .gitignore
- .gitmodules
- .tt_biocontainer_skip
- .tt_skip
- LICENSE
- README.md
- setup.cfg
# Use via CDN
jsDelivrjsDelivr serves any public GitHub repository as a CDN with zero setup. Pick a version and a file to get a ready-to-paste link and snippet.
Link
Example
// repository documentation
Was this content helpful?
(0 ratings)