GeoPressureR

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Global positioning by atmospheric pressure

GeoPressureR 최신버젼 다운로드

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# GeoPressureR <img src="man/figures/logo.png" align="right" height="139"/>

[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7754457.svg)](https://doi.org/10.5281/zenodo.7754457)
[![R-CMD-check](https://github.com/GeoPressure/GeoPressureR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/GeoPressure/GeoPressureR/actions/workflows/R-CMD-check.yaml)
[![pkgdown](https://github.com/GeoPressure/GeoPressureR/actions/workflows/pkgdown.yaml/badge.svg)](https://github.com/GeoPressure/GeoPressureR/actions/workflows/pkgdown.yaml)
[![Codecov test
coverage](https://codecov.io/gh/GeoPressure/GeoPressureR/graph/badge.svg)](https://app.codecov.io/gh/GeoPressure/GeoPressureR)
[![lint](https://github.com/GeoPressure/GeoPressureR/actions/workflows/jarl-check.yml/badge.svg)](https://github.com/GeoPressure/GeoPressureR/actions/workflows/jarl-check.yml)
[![format](https://github.com/GeoPressure/GeoPressureR/actions/workflows/format-check.yaml/badge.svg)](https://github.com/GeoPressure/GeoPressureR/actions/workflows/format-check.yaml)
[![Lifecycle:
stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)

**GeoPressureR** is a R package which help researchers construct the
trajectory of a bird equipped with an atmospheric pressure sensor. The
package is a direct implementation of methods presented in Nussbaumer et
al. ([2023a](https://doi.org/10.1111/2041-210X.14043)) and Nussbaumer et
al. ([2023b](https://doi.org/10.1111/2041-210X.14082)).

## Installation

The best way to install the GeoPressureR package is through Github

``` r
# install.packages("pak")
pak::pkg_install("GeoPressure/GeoPressureR")

# Development version:
pak::pkg_install("GeoPressure/GeoPressureR@dev")
```

## Learn how to use GeoPressureR

The [GeoPressureManual](https://geopressure.org/GeoPressureManual/) is a
great place to start learning about how to use GeoPressureR.

Using the examples, this user guide takes you through each step of the
analysis in detail.

## Start your own analysis

Once you are familiar with the workflow of the method and want to start
your own study, we suggest you use
[GeoPressureTemplate](https://github.com/GeoPressure/GeoPressureTemplate),
a [github template
repository](https://docs.github.com/en/repositories/creating-and-managing-repositories/creating-a-template-repository)
which provides a standard code structure for your analysis.

Using this standardized code structure you will help you on many aspect:
code sharing and troubleshooting, data archiving, work reproducibility.

## Cheatsheet

## How to cite?

Make sure to cite the correct reference (R package, papers of the
underlying methods and/or user manual) according to your use:

> Nussbaumer, R., & Gravey, M. (2022). *GeoPressureR: Global positioning
> by atmospheric pressure.* Zenodo.
> <https://doi.org/10.5281/zenodo.7754457>. Available at:
> <https://github.com/GeoPressure/GeoPressureR>

> Nussbaumer, R., Gravey, M., Briedis, M., & Liechti, F. (2023). Global
> positioning with animal-borne pressure sensors. *Methods in Ecology
> and Evolution, 14*(4), 1104–1117.
> <https://doi.org/10.1111/2041-210X.14043>

> Nussbaumer, R., Gravey, M., Briedis, M., Liechti, F., & Sheldon, D.
> (2023). Reconstructing bird trajectories from pressure and wind data
> using a highly optimised hidden Markov model. *Methods in Ecology and
> Evolution, 14*(4), 1–32. <https://doi.org/10.1111/2041-210X.14082>

> Nussbaumer, R., & Nussbaumer, A. (2024). *GeoPressureManual: Learn how
> to use GeoPressureR with examples.* Zenodo.
> <https://doi.org/10.5281/zenodo.10799355>. Available at:
> <https://github.com/GeoPressure/GeoPressureManual>

Get citation information in R with `citation("GeoPressureR")`.

GeoPressureR

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