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bioinformatics-projects

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A Collection of Bioinformatics Projects

bioinformatics-projects 최신버젼 다운로드

최종 버전 다운로드 (.zip)

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# bioinformatics-projects

Here, I am sharing scripts and methods I used for some of the Bioinformatics projects.

#### Table of Contents
<ol start="1">
 <li>Project 1 - <a href="https://github.com/wijerasa/bioinformatics-projects/wiki/1.-16s-Microbiome-Data-Analysis">16s Microbiome Data Analysis Qiime 1</a></li>
 <ol start="i">
 <li><a href="https://github.com/wijerasa/bioinformatics-projects/wiki/1.-16s-Microbiome-Data-Analysis#loading-qiime-meta-data-to-phyloseq-library">Loading Qiime meta data to Phyloseq library</a></li>
 <li><a href="https://github.com/wijerasa/bioinformatics-projects/wiki/1.-16s-Microbiome-Data-Analysis#prevalence-filtering">Prevalence filtering</a></li>
 <li><a href="https://github.com/wijerasa/bioinformatics-projects/wiki/1.-16s-Microbiome-Data-Analysis#filter-entries-with-unidentied-phylum">Filtering and Normalization</a></li>
 <ol start="i.i">
 <li><a href="https://github.com/wijerasa/bioinformatics-projects/wiki/1.-16s-Microbiome-Data-Analysis#tss">TSS: Total-Sum Scaling</a></li>
 <li> <a href="https://github.com/wijerasa/bioinformatics-projects/wiki/1.-16s-Microbiome-Data-Analysis#rarefying">Rarefying</a></li>
 <li> <a href="https://github.com/wijerasa/bioinformatics-projects/wiki/1.-16s-Microbiome-Data-Analysis#css">CSS: Cumulative-Sum Scaling</a></li>
 </ol>
 <li><a href="https://github.com/wijerasa/bioinformatics-projects/wiki/1.-16s-Microbiome-Data-Analysis#abundance-plot">Abundance Plot</a></li>
 <ol start="i.i">
 <li><a href="https://github.com/wijerasa/bioinformatics-projects/wiki/1.-16s-Microbiome-Data-Analysis#viloline-plot-and-bargraphs">Violine plots and Bargraphs</a></li>
 </ol>
 <li><a href="https://github.com/wijerasa/bioinformatics-projects/wiki/1.-16s-Microbiome-Data-Analysis#metagenomeseq">MetagenomeSeq</a></li>
 <ol start="i.i">
 <li><a href="https://github.com/wijerasa/bioinformatics-projects/wiki/1.-16s-Microbiome-Data-Analysis#viloline-plot-and-bargraphs-1">CSS Normalized Viloline plot and Bargraphs</a></li>
 <li><a href="https://github.com/wijerasa/bioinformatics-projects/wiki/1.-16s-Microbiome-Data-Analysis#presence-absence-testing">Presence-absence testing</a></li>
 <li><a href="https://github.com/wijerasa/bioinformatics-projects/wiki/1.-16s-Microbiome-Data-Analysis#unique-otus-or-features">Unique OTUs or features</a></li>
 <li><a href="https://github.com/wijerasa/bioinformatics-projects/wiki/1.-16s-Microbiome-Data-Analysis#heatmaps-and-pca-plots">HeatMaps and PCA plots</a></li>
 </ol> 
 </ol>
 <li>Project 2 - <a href="https://github.com/wijerasa/bioinformatics-projects/wiki/2.-In-Silico-Restriction-Enzyme-Digestion">In Silico Restriction Enzyme Digestion</a></li>
 <li>Project 3 - <a href="https://github.com/wijerasa/bioinformatics-projects/wiki/3.Random-GGplots">Random GGplots</a></li>
 <li>Project 4 - <a href="https://github.com/wijerasa/Qiime2_Pipeline">Microbiome Data Analysis Qiime 2</a></li>

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