scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
파일 탐색기
최종 버전 다운로드 (.zip)- CEL_seq.fa
- CEL_seq2.fa
- Chromium.fa
- Drop_chip.fa
- Drop_seq_Seq_Well.fa
- inDrop.fa
- MARS_seq.fa
- Microwell-seq.fa
- Quartz-seq.fa
- Quartz-seq2.fa
- sci_RNA_seq.fa
- SCRB-seq.fa
- SMART_seq.fa
- SPLiT_seq.fa
- STRT_seq.fa
- STRT_seq_2i.fa
- STRT_seq_C1.fa
- SureCell.fa
- 3M-february-2018.csv.gz
- README.MD
- definitions.json
- README.MD
- 10x_LIT000220_Product_Sheet_GEM-X-Single-Cell-Gene-Expression_Letter_Digital.pdf
- 10x_LIT000221_Product_Sheet_GEM-X-Single-Cell-Immune-Profiling_Letter_Digital.pdf
- 10x_multiome_Tn5.svg
- 10x_scATAC_Multiome_Tn5.svg
- 3M-3pgex-may-2023.txt.gz
- 3M-5pgex-jan-2023.txt.gz
- 3M-february-2018.txt.gz
- 737K-april-2014_rc.txt.gz
- 737K-august-2016.txt.gz
- 737K-cratac-v1.txt.gz
- atac_737K-arc-v1.txt.gz
- CG000108_AssayConfiguration_SC3v2.pdf
- CG000109_AssayConfiguration_VDJ_RevD.pdf
- CG000168_ChromiumSingleCellATAC_ReagentKits_UserGuide_RevA.pdf
- CG000183_ChromiumSingleCell3__v3_UG_Rev-A.pdf
- CG000184_ChromiumSingleCellSingleCell3v3_FeatureBarcodingtechnology_CRISPR_RevA.pdf
- CG000185_ChromiumSingleCell3__FeatureBarcode_CellSurfaceProtein_Rev_B.pdf
- CG000185_ChromiumSingleCell3__FeatureBarcode_CellSurfaceProtein_RevA.pdf
- CG000197_GuideRNA_SpecificationsCompatible_withFeatureBarcodingtechnology_forCRISPRScreening_Rev-A.pdf
- CG00026_Chromium_Single_Cell_3__Reagent_Kits_User_Guide_RevB.PDF
- CG000330_ChromiumNextGEMSingleCell5_v2_CellSurfaceProtein_RevA.pdf
- CG000338_ChromiumNextGEM_Multiome_ATAC_GEX_User_Guide_RevB.pdf
- CG000338_ChromiumNextGEM_Multiome_ATAC_GEX_User_Guide_RevF.pdf
- CG000496_Chromium_NextGEM_SingleCell_ATAC_ReagentKits_v2_UserGuide_RevA.pdf
- CG000731_ChromiumGEM-X_SingleCell3_ReagentKits_v4_UserGuide_RevA.pdf
- CG000733_ChromiumGEM-X_SingleCell5_ReagentKitsv3_UserGuide_RevA.pdf
- CG000734_ChromiumGEM-X_SingleCell5_ReagentKitsv3_CellSurfaceProtein_UserGuide_RevA.pdf
- gex_737K-arc-v1.txt.gz
- sgRNA_purterb_10x_cs_loc1.svg
- sgRNA_purterb_10x_cs_loc2.svg
- translation_3M-3pgex-may-2023.txt.gz
- translation_3M-february-2018.txt.gz
- BD_CLS1.txt
- BD_CLS2.txt
- BD_CLS3.txt
- GMX_BD-Rhapsody-Single-Cell-Analysis-System-Instrument_UG_EN.pdf
- GMX_BD-Rhapsody-WTA-alpha-Protocol_UG_EN.pdf
- CH-ATAC-seq_SupplementaryTable1.xlsx
- CH-ATAC-seq_Tn5.svg
- 41587_2021_902_MOESM1_ESM.pdf
- 41587_2021_902_MOESM4_ESM.xlsx
- addgene-plasmid-86708-sequence-317051-Map.png
- barcoded_TnY.svg
- 10000167449.pdf
- beads.svg
- beads_dimer.svg
- Bio-Rad_ddSEQ_3p_scRNA_bead_structures.xlsx
- drop_chip_barcode_adapters.txt
- grep.png
- dscATAC_dsciATAC_bead_structures.xlsx
- dscATAC_dsciATAC_bead_structures_Bio-Rad_Update.xlsx
- dscATAC_Tn5.svg
- 13059_2023_2893_MOESM2_ESM.xlsx
- FIPRESCI_Tn5.svg
- s3_oligos.xlsx
- s3_Tn5.svg
- 20210712_supp_methods_table_hydrop_oligonucleotide_list.xlsx
- elife-73971-supp1-v4.docx
- elife-73971-supp2-v4.docx
- elife-73971-supp3-v4.docx
- HyDrop_20200130_plate-1-96_barcode.csv
- HyDrop_20200130_plate-2-96_barcode.csv
- HyDrop_20200130_plate-3-96-ATACseq_barcode.csv
- HyDrop_20200130_plate-3-96-RNAseq_barcode.csv
- 41596_2017_BFnprot2016154_MOESM456_ESM.xlsx
- 41596_2017_BFnprot2016154_MOESM457_ESM.xlsx
- inDrop_Barcode1.csv
- inDrop_barcode1_list.txt
- inDrop_Barcode2.csv
- inDrop_barcode2_list.txt
- Star_CB_UMI_Complex_inDrop.jpg
- 41596_2019_164_MOESM4_ESM.xlsx
- 41596_2019_164_MOESM5_ESM.xlsx
- jaitin-sm.pdf
- 1-s2.0-S0092867418301168-mmc1.xlsx
- 1-s2.0-S0092867418301168-mmc2.xlsx
- Microwell_A1-A96.txt
- Microwell_B1-B96.txt
- Microwell_C1-C96.txt
- 41594_2019_323_MOESM2_ESM.xlsx
- 41594_2019_323_MOESM3_ESM.xlsx
- paired-seq_bc01.csv
- paired-seq_bc02-03-04.csv
- Paired_seq_Tn5.svg
- Star_CB_UMI_Complex_Paired-seq.jpg
- PETRI-seq_Oligonucleotide_Table.xlsx
- PETRI-seq_Protocol.pdf
- 41598_2021_90255_MOESM4_ESM.xlsx
- delley2021_barcode.txt
- fb_v3_bc1.tsv
- fb_v3_bc1_translation.csv
- fb_v3_bc2.tsv
- fb_v3_bc2_translation.csv
- fb_v3_bc3.tsv
- fb_v3_bc3_translation.csv
- fb_v3_bc4.tsv
- fb_v3_bc4_translation.csv
- pip-seq_v2_bc1.tsv
- pip-seq_v2_bc2.tsv
- pip-seq_v2_bc3.tsv
- aba7612_domcke_table-s7.xlsx
- Cusanovich2018_Table_S12.xlsx
- sci-ATAC-C15.csv
- sci-ATAC-D15.csv
- sci-ATAC-P5.csv
- sci-ATAC-P7.csv
- sci-ATAC-seq_Tn5.svg
- 41586_2019_969_MOESM3_ESM.xlsx
- sci-RNA-seq3_hairpin_bc.csv
- sci-RNA-seq3_hp.txt
- sci-RNA-seq3_p5.csv
- sci-RNA-seq3_p5.txt
- sci-RNA-seq3_p7.csv
- sci-RNA-seq3_p7.txt
- sci-RNA-seq3_rt.txt
- sci-RNA-seq3_RT_bc.csv
- Star_CB_UMI_Complex_sci-RNA-seq3.jpg
- 13059_2024_3235_MOESM2_ESM.xlsx
- scifi-ATAC-seq_Tn5.svg
- scifi-RNA-seq_suppl_table1.xlsx
- 41587_2018_BFnbt4038_MOESM11_ESM.xlsx
- 41587_2019_290_MOESM6_ESM.xlsx
- scTHS_Tn5.svg
- 1-s2.0-S0092867420312538-mmc1.xlsx
- share-seq_ligationBC.csv
- tn5.svg
- 41467_2021_21583_MOESM1_ESM.pdf
- 41593_2018_79_MOESM1_ESM.pdf
- 41593_2018_79_MOESM5_ESM.xlsx
- snATAC-i5.csv
- snATAC-i7.csv
- snATAC-T5.csv
- snATAC-T7.csv
- 41467_2021_23213_MOESM11_ESM.xlsx
- addgene-plasmid-169235-sequence-328218.png
- aam8999_tables12.xlsx
- aba5257_table_s3.xlsx
- Round1_barcodes.txt
- Round2_barcodes.txt
- Round3_barcodes.txt
- SPLiT-seq_Round1_bc.csv
- SPLiT-seq_Round2_bc.csv
- SPLiT-seq_Round3_bc.csv
- Star_CB_UMI_Complex_SPLiT-seq.jpg
- 41592_2014_BFnmeth2772_MOESM268_ESM.xlsx
- filereport_read_run_PRJNA140307.tsv
- filereport_read_run_PRJNA203208.tsv
- STRT-seq_C1_bc.csv
- STRT_bc.fa
- STRT_GenomeRes_2011_SI.pdf
- tn5_strt_homodimer.svg
- tn5_strt_seq_2i.svg
- 573253_file02.pdf
- Tn5ME-B_barcode.xlsx
- txci-ATAC_Tn5.svg
- DROP_scChIP-seq.xls
- feyman.jpeg
- G_and_T_seq.png
- illumina-adapter-sequences-1000000002694-14.pdf
- indexed-sequencing-overview-guide-15057455-05.pdf
- itChIP-seq_Table3.xlsx
- LIANTI_Tn5.svg
- MALBAC_outline.png
- ng.3119-S3.xlsx
- Quartz-seq2_cell_barcodes.txt
- s5_Tn5_dimer.svg
- s7_Tn5_homodimer.svg
- scATAC_technical_comp.tsv
- scCAT-seq.png
- scMandT.png
- scMT.png
- scNMT.png
- scNOMe_scCOOL.png
- scRNA-seq_technical_comp.csv
- scTrio.png
- sgRNA_purterb.svg
- sgRNA_seq1.svg
- sgRNA_structure.png
- tn5_dimer.svg
- tn5_s7_homodimer.svg
- 10x_scATAC-seq.md
- sci-ATAC-seq.md
- snATAC-seq.md
- 10xChromium3v1.md
- 10xChromium3v2.md
- 10xChromium3v3.md
- 10xChromium5.md
- inDrop.md
- mcSCRB-seq.md
- sci-RNA-seq.md
- sci-RNA-seq3.md
- SMART-seq2.md
- SPLiT-seq.md
- STRT-seq.md
- 10x_multiome.md
- ISSAAC-seq.md
- Paired-seq.md
- SHARE-seq.md
- SNARE-seq.md
- Building_reference.md
- conf.py
- Epigenetics.md
- Gene_expression.md
- index.rst
- Multi-omics.md
- make.bat
- Makefile
- requirements.txt
- 10xChromium3.html
- 10xChromium3fb.html
- 10xChromium3v1.html
- 10xChromium5.html
- 10xChromium5vdjfb.html
- 10xChromium_multiome.html
- 10xChromium_multiome_archive.html
- 10xChromium_scATAC.html
- BD_Rhapsody.html
- CEL-seq_family.html
- CH-ATAC-seq.html
- CoBATCH.html
- CRISPR-sciATAC.html
- ddSEQ_3pRNA.html
- Delley2021.html
- DR-seq.html
- Drop-ChIP.html
- Drop-seq.html
- dscATAC.html
- FIPRESCI.html
- G_and_T_seq.html
- HyDrop_ATAC.html
- HyDrop_RNA.html
- Illumina.html
- inDrop.html
- ISSAAC-seq.html
- itChIP-seq.html
- LIANTI.html
- MALBAC.html
- MARS-seq.html
- Microwell-seq.html
- Paired-seq.html
- PETRI-seq.html
- PIP-seq.html
- PIP-seq_v1p.html
- plate_and_piATAC-seq.html
- Quartz-seq_family.html
- s3-ATAC.html
- s3-WGS.html
- scBS-seq.html
- scCAT-seq.html
- scDamID.html
- scDamT-seq.html
- scDNase_scMNase.html
- sci-ATAC-seq_family.html
- sci-RNA-seq_family.html
- scifi-ATAC-seq.html
- scifi-RNA-seq.html
- scMandT.html
- scMT-seq.html
- scNMT-seq.html
- scNOMe_scCOOL.html
- SCRB-seq.html
- scRRBS.html
- scTHS-seq.html
- scTrio-seq.html
- SeqWell_S3.html
- SHARE-seq.html
- SMART-seq_family.html
- SNARE-seq.html
- snATAC-seq.html
- Spear-ATAC.html
- SPLiT-seq.html
- SPLiT-seq_archive.html
- STRT-seq_family.html
- SureCell.html
- tang2009.html
- txci-ATAC-seq.html
- VASA-seq.html
- cmunsi.ttf
- cmunso.ttf
- cmunss.ttf
- cmunsx.ttf
- FiraMono-Bold.ttf
- FiraMono-Regular.ttf
- page_format.css
- .gitattributes
- .gitignore
- .readthedocs.yaml
- README.md
# 설치 가이드
1. 코드 내려받기
git clone https://github.com/Teichlab/scg_lib_structs
깃허브에서 프로젝트 코드 전체를 내 컴퓨터로 내려받습니다.
cd scg_lib_structs
방금 내려받은 프로젝트 폴더 안으로 이동합니다.
2. Python
쉬움 추천사전 준비물
pip install -r docs/requirements.txt
requirements.txt 등에 명시된 파이썬 라이브러리를 설치합니다.
python <실행할 파일명>.py # README에서 정확한 실행 파일명을 확인하세요
파이썬 스크립트(또는 모듈)를 실행합니다.
에러 메시지 없이 실행되고 터미널에 안내 문구가 출력되면 정상입니다.
3. Make
보통사전 준비물
- Git GitHub에서 프로젝트 코드를 내려받으려면 필요합니다.
- Make Linux/macOS는 보통 기본 설치되어 있습니다. Windows는 별도 설치(예: MSYS2, WSL)가 필요합니다.
cd docs
이 프로젝트의 관련 파일이 하위 폴더 안에 있어서, 먼저 그 폴더로 이동합니다.
make
생성된 빌드 설정을 바탕으로 실제 컴파일을 진행해 실행 파일을 만듭니다.
에러 없이 끝나면 성공입니다. 생성된 실행 파일을 직접 실행해보세요.
// repository documentation
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