r-hta-workshop-2024

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r-hta-workshop-2024

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Open source code from the R-HTA workshop held on 28th June - 2nd July 2024

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- - easyBIM - R HTA Slides.pdf
  - rHTAslides.html
- 2024-06-24 PATT slides.pdf
- 2024-06-27_Andrew Clark R for HTA slides.pdf
- 240701-jepoirrier-HEOR-Modelling-Consulting.pdf
- 240701-jepoirrier-panel-building-capacity-R.pdf
- 421 R for HTA presentation v1.0 25 June 2024 PDF.pdf
- Analysis of the interval from MA to HTA with Shiny Victoria Zaitceva Hive.pdf
- Building Shiny Apps for HEM – Paul Schneider R4HTA 2024.pdf
- gmod_decision_twigs.pptx
- Ileostomy RHTA.pdf
- itc_shiny_app.pdf
- Methods for estimating Healthy Life Expectancy - LCP_Pijper_Kettle.pdf
- Modeling the Future - Pioneering the First Dossier Submission with R - 2024_07_01 - FINAL.pdf
- Muston RHTA final.pdf
- R for HTA 2024_Junwen.pdf
- R-HTA 2024 presentation - Michael ODonnell .pdf
- README.md
- RforHTA24 Zachary Waller.pdf
- rHTA Jack Ettinger Warmth on prescription.pptx
- RHTA24-assertHE.pdf
- Sheffield.pptx
- Shubhram Pandey.pptx.pdf
- SW Speeding up R model.pdf
README.md

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This repository contains open-source code examples from the R-HTA workshop held on 28th June - 2nd July 2024.

For more information please see the [main website](https://r-hta.org/project/workshop/), or contact Robert Smith at [rsmith@darkpeakanalytics.com](mailto:rsmith@darkpeakanalytics.com).

## Materials

Links to external materials can be found in the table below, thanks to Wael Mohammed for updating this throughout the workshop as new slides were made available.

### Friday 28th June 2024

| Author                  | Title                                                                         | Institution                                          | Links           |
| ----------------        | ----------                                                                    |   ----------                                         |  ----------------- |
| Robert Smith & Tom Ward | assertHE: an R package to improve quality assurance of health economic models | Dark Peak Analytics, UoS & GSK        |  [R package](https://github.com/dark-peak-analytics/assertHE); [Slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/RHTA24-assertHE.pdf); [Paper](https://drive.google.com/file/d/1ZR0zMZjiEERdzoQM49Pm2LXtOSe4agMi/view?usp=sharing); [Video](https://www.youtube.com/watch?v=wr8-w-6QGno)              |
| Dawn Lee & Darren Burns | Learnings from the design of a pathway model in R | Peninsula Technology Assessment Group (PenTAG)        |  [Paper](https://doi.org/10.1007/s41669-024-00490-x); [slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/2024-06-24%20PATT%20slides.pdf)             |
| Stuart Wright | Improving the speed of a discrete event simulation model in breast cancer screening: The experience of an intermediate level R user | University of Manchester | [Slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/SW%20Speeding%20up%20R%20model.pdf)     |
| Andrew Pijper & Jamie Kettle | Methods for estimating Healthy Life Expectancy | LCP Health Analytics | [Slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/Methods%20for%20estimating%20Healthy%20Life%20Expectancy%20-%20LCP_Pijper_Kettle.pdf)   |
| Lewis Michaelwaite | The design and development of the easyBIM R package | Maple Health Group | [Slides](https://github.com/r-hta/r-hta-workshop-2024/tree/main/content/easyBIM%20-%20R%20HTA%20Slides)   |
| Michael O’Donnell | REEEVR - Automated Conversion of Excel to R | University of Bristol | [Slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/R-HTA%202024%20presentation%20-%20Michael%20ODonnell%20.pdf)   |
| Alfredo Mariani | The advantages and challenges of using R and Shiny to develop diagnostic pathway models for NICE clinical guidelines | NICE | [Slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/Sheffield.pptx)   |
| Shubhram Pandey | R-Shiny tool to pool Kaplan Meier curves from single-arm studies using a distribution-free approach | heoRlytics | [Slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/Shubhram%20Pandey.pptx.pdf)   |
| Paul Schneider | Building Shiny Apps for Health Economic Models: A Practical Guide | Dark Peak Analytics | [Slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/Building%20Shiny%20Apps%20%20for%20HEM%20%E2%80%93%20Paul%20Schneider%20R4HTA%202024.pdf)   |

### Monday 1st July 2024

| Author                 | Title                                                                          | Institution                                           | Links             |
|------------------      |------------------                                                              |-------------------                                    |-------------------|
| Junwen Zhou | Estimating Costs Associated with Disease Model States Using Generalized Linear Models in R | University of Oxford | [Slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/R%20for%20HTA%202024_Junwen.pdf) |
| Sven Klijn | Modeling the Future: Pioneering the First Dossier Submission with R | Bristol Myers Squibb | [Slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/Modeling%20the%20Future%20-%20Pioneering%20the%20First%20Dossier%20Submission%20with%20R%20-%202024_07_01%20-%20FINAL.pdf)   |
| Zachary Waller | Spending time to save time: strategies for making your code run faster | Queen’s University Belfast | [Slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/RforHTA24%20Zachary%20Waller.pdf) |
| Jean-Etienne Poirrier | Using R for Health Economics Modelling in Consulting: R (are) We There Yet? | Parexel | [Slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/240701-jepoirrier-HEOR-Modelling-Consulting.pdf) |
| Hawre Jalal | Introducing Grammar of Modeling R package (gmod) and the Decision Twigs graphical user interface for building HTA models | University of Ottawa | [Slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/gmod_decision_twigs.pptx) |
| Panel | Building capacity in the use of R for HTA | | [Jean-Etienne Poirrier](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/240701-jepoirrier-panel-building-capacity-R.pdf) |

### Tuesday 2nd July 2024

| Author                 | Title                                                                          | Institution                                           | Links             |
|------------------      |------------------                                                              |-------------------                                    |-------------------|
| Andrew Clark | Cross-referencing and aggregating multiple independent sources to estimate subgroup-level values: The EQ-5D utility of emicizumab in severe haemophilia A | Delta Hat | [Slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/2024-06-27_Andrew%20Clark%20R%20for%20HTA%20slides.pdf) |
| Anna Grootendorst | Application of RShiny as a Strategic Tool for Evidence-Based Payer Engagement in Nordic Influenza Vaccine Tenders | NHTA, CSL Seqirus | [Slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/421%20R%20for%20HTA%20presentation%20v1.0%2025%20June%202024%20PDF.pdf) |
| Niccolò Morgante | Early modelling of ileostomy management systems: showcasing value in RShiny | NHTA | [Slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/Ileostomy%20RHTA.pdf) |
| Jack Ettinger |	Assessing the Cost-effectiveness of Warmth on Prescription Schemes for COPD Patients: A Markov Model Analysis Using R | Parexel | [Slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/rHTA%20Jack%20Ettinger%20Warmth%20on%20prescription.pptx) |
| Dominic Muston | An R package to inform structural assumptions for three state oncology cost-effectiveness models and examine the impact of adjusting for background mortality (psm3mkv) | MSD | [Slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/Muston%20RHTA%20final.pdf) |
| Annachiara Rossi | A User-Friendly R-Shiny Application for Indirect Treatment Comparisons in Health Technology Assessment | Novo Nordisk | [Slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/itc_shiny_app.pdf) |
| Victoria Zaitceva | Analysing the Interval from Marketing Authorization to HTA Outcomes in High-Income Countries Using the Shiny Dashboard | HIVE Health Optimum | [Slides](https://github.com/r-hta/r-hta-workshop-2024/blob/main/content/Analysis%20of%20the%20interval%20from%20MA%20to%20HTA%20with%20Shiny%20Victoria%20Zaitceva%20Hive.pdf) |

## Contributing to this repository

Please feel free to submit a pull request into this repository with your material added to the 'content' folder, alternatively email your materials in a single folder containing a file called README.md in the top level, which describes the code, to [rsmith@darkpeakanalytics.com](mailto:rsmith@darkpeakanalytics.com) and we will upload for you.

## Using this repository

Please feel free to clone this repository to your machine, or download the files as a zip folder. This can be done by clicking on the green button on the top right.

![image](https://user-images.githubusercontent.com/41961614/192293545-5dcca23f-c3db-410b-95cf-529256356f85.png)

If you have downloaded the ZIP, please ensure that you unzip the folder and then click on the R project file to load the project into RStudio.

We hope you find the content useful!

Rob (On behalf of the wider R-HTA team)

r-hta-workshop-2024

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