density_decoding
spike feature decoding
File Explorer
- icon.png
- model_diagram.png
- spike_localization_features.png
- behavior_decoder.py
- advi.py
- cavi.py
- glm.py
- data_utils.py
- utils.py
- decode_pipeline.py
- .gitignore
- demo.ipynb
- inference.ipynb
- LICENSE
- main.py
- README.md
- requirements.txt
- setup.py
# Use via CDN
jsDelivrjsDelivr serves any public GitHub repository as a CDN with zero setup. Pick a version and a file to get a ready-to-paste link and snippet.
Command Glossary
Commands referenced in this DOCs, explained below.
conda activate
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conda activate
Activate a conda environment.
See also: `conda deactivate`.
conda activate myenv
Activate an existing environment named `myenv`:
conda activate {{path/to/myenv}}
Activate an existing environment located at custom path:
conda activate --stack myenv
Stack `myenv` environment on top of a previous environment making libraries/commands/variables from both accessible:
conda create
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conda create
Create new conda environments.
conda create {{[-y|--yes]}} {{[-n|--name]}} py39 python=3.9 "numpy>=1.11" scipy
Create a new environment named `py39`, install Python 3.9, NumPy v1.11 or above in it, and the latest stable version of SciPy. Say yes to all confirmations:
conda create {{[-n|--name]}} myenv --file {{file1.yml}} --file {{file2.yml}}
Create a new environment named `myenv` and install packages listed in files:
conda create {{[-p|--prefix]}} {{path/to/myenv}}
Create a new environment at a custom path (i.e. prefix):
git clone
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git clone
Clone an existing repository.
git clone {{remote_repository_location}} {{path/to/directory}}
Clone an existing repository into a new directory (the default directory is the repository name):
git clone --recursive {{remote_repository_location}}
Clone an existing repository and its submodules:
git clone {{[-n|--no-checkout]}} {{remote_repository_location}}
Clone only the `.git` directory of an existing repository:
pip install
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pip install
Install Python packages.
pip install {{package1 package2 ...}}
Install one or more packages:
pip install {{package1 package2 ...}} {{[-U|--upgrade]}}
Upgrade all specified packages to the latest version, installing any that are not already present:
pip install {{package}}=={{version}}
Install a specific version of a package:
