resector

(★ 14)

Algorithm to simulate resection surgery on brain MRI scans. Published in MICCAI 2020, extended in IJCARS.

Owner Repos

awesome-medical-imaging ★ 248

Awesome list of software that I use to do research in medical imaging.
vesseg ★ 44

Brain vessel segmentation using 3D convolutional neural networks

Python
SlicerParcellation ★ 32

3D Slicer modules for brain segmentation using deep learning.

Python
resseg-ijcars ★ 19

Code, data and model for Pérez-García et al. 2021, "A self-supervised learning strategy for postoperative brain cavity segmentation simulating resections"

Python
optimally-oriented-flux ★ 15

No description provided.

Python
miccai-educational-challenge-2019 ★ 15

Tutorial about combining PyTorch and NiftyNet for deep learning and medical image computing

Jupyter Notebook

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  • LICENSE
  • Makefile
  • MANIFEST.in
  • README.md
  • requirements_dev.txt
  • setup.cfg
  • setup.py
  • tox.ini

# Use via CDN

jsDelivr

jsDelivr serves any public GitHub repository as a CDN with zero setup. Pick a version and a file to get a ready-to-paste link and snippet.

Link
Example

Command Glossary

Commands referenced in this DOCs, explained below.

🔍

conda create

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Create new conda environments.

conda create {{[-y|--yes]}} {{[-n|--name]}} py39 python=3.9 "numpy>=1.11" scipy

Create a new environment named `py39`, install Python 3.9, NumPy v1.11 or above in it, and the latest stable version of SciPy. Say yes to all confirmations:

conda create {{[-n|--name]}} myenv --file {{file1.yml}} --file {{file2.yml}}

Create a new environment named `myenv` and install packages listed in files:

conda create {{[-p|--prefix]}} {{path/to/myenv}}

Create a new environment at a custom path (i.e. prefix):

🔍

conda

View Details ▼

Package, dependency, and environment management for any programming language.
Some subcommands such as `create` have their own usage documentation.
See also: `mamba`.

conda create {{[-n|--name]}} {{environment_name}} {{python=3.9 matplotlib}}

Create a new environment, installing named packages into it:

conda info {{[-e|--envs]}}

List all environments:

conda activate {{environment_name}}

Activate an environment:

🔍

pip install

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Install Python packages.

pip install {{package1 package2 ...}}

Install one or more packages:

pip install {{package1 package2 ...}} {{[-U|--upgrade]}}

Upgrade all specified packages to the latest version, installing any that are not already present:

pip install {{package}}=={{version}}

Install a specific version of a package:

// repository documentation