mag
Assembly and binning of metagenomes
File Explorer
Download Latest Version (.zip)- devcontainer.json
- setup.sh
- action.yml
- action.yml
- bug_report.yml
- config.yml
- feature_request.yml
- awsfulltest.yml
- awstest.yml
- branch.yml
- clean-up.yml
- download_pipeline.yml
- fix_linting.yml
- labeler.yml
- linting.yml
- nf-test.yml
- pr-comment.yml
- release-announcements.yml
- template-version-comment.yml
- .dockstore.yml
- CODEOWNERS
- PULL_REQUEST_TEMPLATE.md
- settings.json
- GCA_000840245.1_ViralProj14204_genomic.fna.gz
- GCA_002596845.1_ASM259684v1_genomic.fna.gz
- email_template.html
- email_template.txt
- methods_description_template.yml
- multiqc_config.yml
- nf-core-mag_logo_light.png
- schema_assembly_input.json
- schema_input.json
- sendmail_template.txt
- combine_tables.py
- create_metabinner_bins.py
- domain_classification.R
- filter_ssu.py
- get_mag_depths.py
- get_mag_depths_summary.py
- multiqc_to_custom_tsv.py
- prepare_bigmag_summary.py
- split_fasta.py
- summarise_pydamagebins.py
- summary_gtdbtk.py
- base.config
- containers_conda_lock_files_amd64.config
- containers_conda_lock_files_arm64.config
- containers_docker_amd64.config
- containers_docker_arm64.config
- containers_singularity_https_amd64.config
- containers_singularity_https_arm64.config
- containers_singularity_oras_amd64.config
- containers_singularity_oras_arm64.config
- igenomes.config
- igenomes_ignored.config
- modules.config
- test.config
- test_alternatives.config
- test_assembly_input.config
- test_full.config
- test_hybrid.config
- test_longreadonly.config
- test_longreadonly_alternatives.config
- test_minimal.config
- test_single_end.config
- mag_logo.png
- mag_logo.svg
- mag_logo_mascot_dark.png
- mag_logo_mascot_dark.svg
- mag_logo_mascot_light.png
- mag_logo_mascot_light.svg
- mag_logo_mascot_only.png
- mag_logo_mascot_only.svg
- mag_metromap_dark.png
- mag_metromap_dark.svg
- mag_metromap_light.png
- mag_metromap_light.svg
- mag_workflow_dark_v4_0_0.png
- mag_workflow_dark_v4_0_0.svg
- mag_workflow_v4_0_0.png
- mag_workflow_v4_0_0.svg
- nf-core-mag_logo_dark.png
- nf-core-mag_logo_light.png
- new_to_mag.md
- resource_guidance.md
- CONTRIBUTING.md
- output.md
- README.md
- usage.md
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- environment.yml
- main.nf
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- bbmap-bbnorm.diff
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- vcf_gz_index.config
- vcf_gz_index_csi.config
- vcf_gz_index_tbi.config
- environment.yml
- main.nf
- meta.yml
- linux_amd64-bd-6d1f7006d91892b3_1.txt
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.interleaved.config
- nextflow.save_failed.config
- environment.yml
- main.nf
- meta.yml
- linux_amd64-bd-5cb1a2fa2f18c7c2_1.txt
- linux_arm64-bd-e455e32f745abe68_1.txt
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow_unzipped_zipped.config
- nextflow_zipped_unzipped.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- maxbin2.diff
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- linux_amd64-bd-c1f4a7982b743963_1.txt
- linux_amd64-bd-db7c73dae76bc9e6_1.txt
- linux_arm64-bd-40bf3b435e89dc22_1.txt
- linux_arm64-bd-d167b8012595a136_1.txt
- custom_prefix.config
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- tags.yaml
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- linux_amd64-bd-27b5cdb2d516f347_1.txt
- linux_arm64-bd-8f955ee5391535ca_1.txt
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- linux_amd64-bd-f21b98bcef4c3579_1.txt
- linux_arm64-bd-2b8a3d67cd9e777a_1.txt
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- linux_amd64-bd-1c195c7c48e87ebb_1.txt
- linux_arm64-bd-f34ec9a9a17b6a3f_1.txt
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- linux_amd64-bd-1c195c7c48e87ebb_1.txt
- linux_arm64-bd-f34ec9a9a17b6a3f_1.txt
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- nextflow2.config
- environment.yml
- main.nf
- meta.yml
- csi.nextflow.config
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- semibin-singleeasybin.diff
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- nextflow_PE.config
- nextflow_SE.config
- environment.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- environment.yml
- main.nf
- meta.yml
- untar.diff
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf
- meta.yml
- main.nf.test
- main.nf.test.snap
- main.nf
- meta.yml
- main.function.nf.test
- main.function.nf.test.snap
- main.workflow.nf.test
- nextflow.config
- main.nf
- meta.yml
- main.function.nf.test
- main.function.nf.test.snap
- main.nf.test
- main.nf.test.snap
- main.workflow.nf.test
- main.workflow.nf.test.snap
- nextflow.config
- main.nf
- meta.yml
- main.nf.test
- nextflow.config
- nextflow_schema.json
- main.nf
- meta.yml
- .nftignore
- default.nf.test
- default.nf.test.snap
- nextflow.config
- test_alternatives.nf.test
- test_alternatives.nf.test.snap
- test_assembly_input.nf.test
- test_assembly_input.nf.test.snap
- test_hybrid.nf.test
- test_hybrid.nf.test.snap
- test_longreadonly.nf.test
- test_longreadonly.nf.test.snap
- test_longreadonly_alternatives.nf.test
- test_longreadonly_alternatives.nf.test.snap
- test_minimal.nf.test
- test_minimal.nf.test.snap
- test_single_end.nf.test
- test_single_end.nf.test.snap
- mag.nf
- .gitattributes
- .gitignore
- .nf-core.yml
- .pre-commit-config.yaml
- .prettierignore
- .prettierrc.yml
- CHANGELOG.md
- CITATIONS.md
- CODE_OF_CONDUCT.md
- LICENSE
- main.nf
- modules.json
- nextflow.config
- nextflow_schema.json
- nf-test.config
- README.md
- ro-crate-metadata.json
- tower.yml
// repository documentation
Was this content helpful?
(0 ratings)
