covid19model
Code for modelling estimated deaths and cases for COVID19.
파일 탐색기
- bug_report.md
- feature_request.md
- ci.yml
- base.stan
- plot-3-panel.r
- preprocessing-subnation-brazil.r
- brazil-deaths.csv
- brazil-interventions.csv
- brazil-population.csv
- df-Brazil.csv
- Global-Mobility-Report.csv
- IFRS-all.csv
- mobility-processed-brazil.csv
- severity_inputs.csv
- .gitkeep
- .gitkeep
- catalog.yml
- .DS_Store
- cdc_survey.csv
- chi_emodo_mobility_trends.rds
- CI_OR_age_Zhang.csv
- contact.model_logc_vs_logpop_200623.rds
- Coronavirus_and_School_Closures_210113.csv
- covariates.RDS
- cross_sectional_national_survey.csv
- DeathsByAge_US_201029_cured.csv
- DeathsByAge_US_201210_cured.csv
- df_predict_reporting_age_strata_201126.rds
- df_predict_reporting_age_strata_201126_cured.rds
- df_predict_reporting_age_strata_210103.rds
- df_predict_reporting_age_strata_210103_cured.rds
- estimate_contact_intensities_outbreak_China.rds
- estimate_contact_intensities_outbreak_UK.rds
- fsq_visit_data_aug_refresh_200829.csv
- fsq_visit_data_dec_refresh_201210.csv
- fsq_visit_data_nov_refresh_201112.csv
- grouped.csv
- Hospitalization_all_locs.csv
- ifr-by-age-prior_BetaBinomial_200902.csv
- ifr-by-age-prior_Brazeau_201113.csv
- ifr-by-age-prior_Levin_200904.csv
- ifr-by-age-prior_Levin_201117.csv
- ifr-by-age-prior_Levin_raw_200904.csv
- ifr-by-age-prior_Levin_raw_201117.csv
- ifr-by-age-prior_Verity_200624.csv
- ifr-by-age-prior_Verity_raw_200429.csv
- interventions_all.RDS
- jhu_death_data_padded_200902.rds
- jhu_death_data_padded_201030.rds
- jhu_death_data_padded_201210.rds
- NYC_deaths_200902.csv
- NYC_deaths_201030.csv
- NYC_deaths_201210.csv
- nyt_death_data_padded_200902.rds
- nyt_death_data_padded_201030.rds
- nyt_death_data_padded_201210.rds
- OxCGRT_US_subnational_09Sept2020.csv
- OxCGRT_US_subnational_13Jan2021.csv
- OxCGRT_US_subnational_31Oct2020.csv
- polymod.tab.bin_BE_weekday.rda
- polymod.tab.bin_BE_weekend.rda
- polymod.tab.bin_DE_weekday.rda
- polymod.tab.bin_DE_weekend.rda
- polymod.tab.bin_FI_weekday.rda
- polymod.tab.bin_FI_weekend.rda
- polymod.tab.bin_GB_weekday.rda
- polymod.tab.bin_GB_weekend.rda
- polymod.tab.bin_IT_weekday.rda
- polymod.tab.bin_IT_weekend.rda
- polymod.tab.bin_LU_weekday.rda
- polymod.tab.bin_LU_weekend.rda
- polymod.tab.bin_NL_weekday.rda
- polymod.tab.bin_NL_weekend.rda
- polymod.tab.bin_PL_weekday.rda
- polymod.tab.bin_PL_weekend.rda
- polymod_data_1yageband_200705.rds
- polymod_data_with_covariates_200623.rds
- popByAge_v200421.csv
- school_cases.csv
- serial_interval.csv
- states.csv
- us_population_withnyc.rds
- US_state_to_state_2020_06_22.csv
- us_states_area_measurements.csv
- usa-regions.csv
- USstatesCov19distancingpolicy.csv
- weighted_ifr.RDS
- chi_emodo_mobility_trends.rds
- CI_OR_age_Zhang.csv
- contact.model_logc_vs_logpop_200623.rds
- contact_predictions.rds
- coronavirus-child-care-closures-data.csv
- covariates.csv
- covariates.RDS
- DeathsByAge_US_200909.csv
- estimate_contact_intensities_outbreak_China.rds
- estimate_contact_intensities_outbreak_UK.rds
- fsq_visit_data_aug_refresh_200829.csv
- grouped.csv
- Hospitalization_all_locs.csv
- ifr-by-age-prior_BetaBinomial_200902.csv
- ifr_age_200504.csv
- ifr_age_200902.csv
- ifr_age_Levin_200904.csv
- interventions_all.RDS
- jhu_death_data_padded_200902.rds
- NYC_deaths_200902.csv
- nyt_death_data_padded_200902.rds
- OxCGRT_US_subnational_09Sept2020.csv
- polymod.tab.bin_GB_weekday.rda
- polymod.tab.bin_GB_weekend.rda
- polymod_data_with_covariates_200623.rds
- popByAge_v200421.csv
- serial_interval.csv
- states.csv
- us_population_withnyc.rds
- US_state_to_state_2020_06_22.csv
- us_states_area_measurements.csv
- usa-regions.csv
- USstatesCov19distancingpolicy.csv
- weighted_ifr.RDS
- .DS_Store
- cdc_survey.csv
- chi_emodo_mobility_trends.rds
- CI_OR_age_Zhang.csv
- contact.model_logc_vs_logpop_200623.rds
- Coronavirus_and_School_Closures_200910.csv
- covariates.RDS
- cross_sectional_national_survey.csv
- DeathsByAge_US_201029.csv
- df_predict_reporting_age_strata_201126.rds
- estimate_contact_intensities_outbreak_China.rds
- estimate_contact_intensities_outbreak_UK.rds
- fsq_visit_data_nov_refresh_201112.csv
- grouped.csv
- Hospitalization_all_locs.csv
- ifr-by-age-prior_BetaBinomial_200902.csv
- ifr-by-age-prior_Levin_200904.csv
- ifr-by-age-prior_Levin_201117.csv
- ifr-by-age-prior_Verity_200624.csv
- interventions_all.RDS
- jhu_death_data_padded_201030.rds
- NYC_deaths_201030.csv
- nyt_death_data_padded_201030.rds
- OxCGRT_US_subnational_06Oct2020.csv
- polymod.tab.bin_BE_weekday.rda
- polymod.tab.bin_BE_weekend.rda
- polymod.tab.bin_DE_weekday.rda
- polymod.tab.bin_DE_weekend.rda
- polymod.tab.bin_FI_weekday.rda
- polymod.tab.bin_FI_weekend.rda
- polymod.tab.bin_GB_weekday.rda
- polymod.tab.bin_GB_weekend.rda
- polymod.tab.bin_IT_weekday.rda
- polymod.tab.bin_IT_weekend.rda
- polymod.tab.bin_LU_weekday.rda
- polymod.tab.bin_LU_weekend.rda
- polymod.tab.bin_NL_weekday.rda
- polymod.tab.bin_NL_weekend.rda
- polymod.tab.bin_PL_weekday.rda
- polymod.tab.bin_PL_weekend.rda
- polymod_data_1yageband_200705.rds
- polymod_data_with_covariates_200623.rds
- popByAge_v200421.csv
- school_cases.csv
- serial_interval.csv
- states.csv
- us_population_withnyc.rds
- US_state_to_state_2020_06_22.csv
- us_states_area_measurements.csv
- usa-regions.csv
- USstatesCov19distancingpolicy.csv
- weighted_ifr.RDS
- .DS_Store
- cdc_survey.csv
- chi_emodo_mobility_trends.rds
- CI_OR_age_Zhang.csv
- contact.model_logc_vs_logpop_200623.rds
- Coronavirus_and_School_Closures_200910.csv
- covariates.RDS
- cross_sectional_national_survey.csv
- DeathsByAge_US_201029_cured.csv
- df_predict_reporting_age_strata_201126_cured.rds
- estimate_contact_intensities_outbreak_China.rds
- estimate_contact_intensities_outbreak_UK.rds
- fsq_visit_data_dec_refresh_201029.csv
- grouped.csv
- Hospitalization_all_locs.csv
- ifr-by-age-prior_BetaBinomial_200902.csv
- ifr-by-age-prior_Levin_200904.csv
- ifr-by-age-prior_Levin_201117.csv
- ifr-by-age-prior_Verity_200624.csv
- interventions_all.RDS
- jhu_death_data_padded_201030.rds
- NYC_deaths_201030.csv
- nyt_death_data_padded_201030.rds
- OxCGRT_US_subnational_06Oct2020.csv
- polymod.tab.bin_BE_weekday.rda
- polymod.tab.bin_BE_weekend.rda
- polymod.tab.bin_DE_weekday.rda
- polymod.tab.bin_DE_weekend.rda
- polymod.tab.bin_FI_weekday.rda
- polymod.tab.bin_FI_weekend.rda
- polymod.tab.bin_GB_weekday.rda
- polymod.tab.bin_GB_weekend.rda
- polymod.tab.bin_IT_weekday.rda
- polymod.tab.bin_IT_weekend.rda
- polymod.tab.bin_LU_weekday.rda
- polymod.tab.bin_LU_weekend.rda
- polymod.tab.bin_NL_weekday.rda
- polymod.tab.bin_NL_weekend.rda
- polymod.tab.bin_PL_weekday.rda
- polymod.tab.bin_PL_weekend.rda
- polymod_data_1yageband_200705.rds
- polymod_data_with_covariates_200623.rds
- popByAge_v200421.csv
- school_cases.csv
- serial_interval.csv
- states.csv
- us_population_withnyc.rds
- US_state_to_state_2020_06_22.csv
- us_states_area_measurements.csv
- usa-regions.csv
- USstatesCov19distancingpolicy.csv
- weighted_ifr.RDS
- .DS_Store
- coronavirus-child-care-closures-data.csv
- coronavirus-school-re-opening-data.csv
- Coronavirus_and_School_Closures_old.csv
- covariates.csv
- DeathsByAge_US_200909.csv
- DeathsByAge_US_200910.csv
- DeathsByAge_US_200926.csv
- DeathsByAge_US_200926_old.csv
- DeathsByAge_US_201030.csv
- DeathsByAge_US_201030_bug.csv
- DeathsByAge_US_201127.csv
- DeathsByAge_US_201210.csv
- DeathsByAge_US_201210_cured_old.csv
- DeathsByAge_US_201210_cured_old2.csv
- df_predict_reporting_age_strata_201124.rds
- df_predict_reporting_age_strata_201126.rds
- df_predict_reporting_age_strata_201201.rds
- df_predict_reporting_age_strata_201217.rds
- fsq_visit_data_aug_refresh_200829.csv
- fsq_visit_data_sep_refresh_200920.csv
- fsq_visit_data_sep_refresh_200924.csv
- jhu_death_data_padded_200926.rds
- jhu_death_data_padded_201127.rds
- NYC_deaths_200926.csv
- NYC_deaths_201127.csv
- nyt_death_data_padded_200926.rds
- nyt_death_data_padded_201127.rds
- OxCGRT_US_subnational_06Oct2020.csv
- .DS_Store
- CasesByAge_Sweden_week24.csv
- estimate_contact_intensities_outbreak_Zhang.rds
- pop.data_EU.csv
- PropDeathsByAge_Sweden_week24.csv
- SeroByAge_Sweden.csv
- track_trace_countries.csv
- .DS_Store
- base_age_prior_ifr4.stan
- base_age_prior_ifr_200817_cmdstanv.stan
- base_age_prior_ifr_200818_cmdstanv.stan
- base_age_prior_ifr_200819a2_cmdstanv.stan
- base_age_prior_ifr_200819a_cmdstanv.stan
- base_age_prior_ifr_200819b2_cmdstanv.stan
- base_age_prior_ifr_200819b_cmdstanv.stan
- base_age_prior_ifr_200820a10_cmdstanv.rds
- base_age_prior_ifr_200820a10_cmdstanv.stan
- base_age_prior_ifr_200820a11_cmdstanv.stan
- base_age_prior_ifr_200820a12_cmdstanv.rds
- base_age_prior_ifr_200820a12_cmdstanv.stan
- base_age_prior_ifr_200820a13_cmdstanv.rds
- base_age_prior_ifr_200820a13_cmdstanv.stan
- base_age_prior_ifr_200820a14_cmdstanv.rds
- base_age_prior_ifr_200820a14_cmdstanv.stan
- base_age_prior_ifr_200820a15_cmdstanv.stan
- base_age_prior_ifr_200820a1_cmdstanv.stan
- base_age_prior_ifr_200820a2_cmdstanv.stan
- base_age_prior_ifr_200820a3_cmdstanv.stan
- base_age_prior_ifr_200820a4_cmdstanv.stan
- base_age_prior_ifr_200820a5_cmdstanv.stan
- base_age_prior_ifr_200820a6_cmdstanv.rds
- base_age_prior_ifr_200820a6_cmdstanv.stan
- base_age_prior_ifr_200820a7_cmdstanv.rds
- base_age_prior_ifr_200820a7_cmdstanv.stan
- base_age_prior_ifr_200820a8_cmdstanv.stan
- base_age_prior_ifr_200820a9_cmdstanv.rds
- base_age_prior_ifr_200820a9_cmdstanv.stan
- base_age_prior_ifr_200820b1_cmdstanv.stan
- base_age_prior_ifr_200820b2_cmdstanv.stan
- base_age_prior_ifr_200820b3_cmdstanv.rds
- base_age_prior_ifr_200820b3_cmdstanv.stan
- base_age_prior_ifr_200820b4_cmdstanv.rds
- base_age_prior_ifr_200820b4_cmdstanv.stan
- base_age_prior_ifr_200820b5_cmdstanv.stan
- base_age_prior_ifr_200820b6_cmdstanv.stan
- ifr-by-age-assess-mixing.r
- ifr-by-age-make-posterior-interval-plots.r
- ifr-by-age-save-prior.r
- ifr-by-age-stan.r
- make-analysis-ifr-by-age-HPC.R
- .DS_Store
- compute-ifr.R
- deprecated-post-processing-functions.r
- deprecated-stan-functions.R
- format_data_plotting.R
- foursquare_mobility.R
- foursquare_mobility_extend.R
- geom-stepribbon.r
- preprocess-find-polynomial-coefficients-ifr-by-age.r
- preprocess-other.r
- read-data-compare-nyt-and-jhu.R
- .DS_Store
- generate-quantities-forecasts.sh
- post-processing-forecasts.sh
- .DS_Store
- base_age_200414.stan
- base_age_200415.stan
- base_age_200415b.stan
- base_age_200416.stan
- base_age_200416_R0_more_vague.stan
- base_age_200416_tau_more_vague.stan
- base_age_200416b.stan
- base_age_200419.stan
- base_age_200420.stan
- base_age_200420b.stan
- base_age_200420c.stan
- base_age_200421a.stan
- base_age_200421b.stan
- base_age_200422.stan
- base_age_200423.stan
- base_age_200427.stan
- base_age_200427b.stan
- base_age_fsq_mobility_200606_cmdstanv.stan
- base_age_fsq_mobility_200606b_cmdstanv.stan
- base_age_fsq_mobility_200606c_cmdstanv.stan
- base_age_fsq_mobility_200606d_cmdstanv.stan
- base_age_fsq_mobility_200611_cmdstanv.stan
- base_age_fsq_mobility_200612_cmdstanv.stan
- base_age_fsq_mobility_200612b_cmdstanv.stan
- base_age_fsq_mobility_200612c_cmdstanv.stan
- base_age_fsq_mobility_200612d_cmdstanv.stan
- base_age_fsq_mobility_200612d_gqs.stan
- base_age_fsq_mobility_200612e_cmdstanv.stan
- base_age_fsq_mobility_200612g_cmdstanv.stan
- base_age_fsq_mobility_200612h_cmdstanv.stan
- base_age_fsq_mobility_200612h_gqs.stan
- base_age_fsq_mobility_200615a_cmdstanv.stan
- base_age_fsq_mobility_200615a_gqs.stan
- base_age_fsq_mobility_200615b_cmdstanv.stan
- base_age_fsq_mobility_200615b_gqs.stan
- base_age_fsq_mobility_200615c_cmdstanv.stan
- base_age_fsq_mobility_200615c_gqs.stan
- base_age_fsq_mobility_200615d_cmdstanv.stan
- base_age_fsq_mobility_200615d_gqs.stan
- base_age_fsq_mobility_200615e_cmdstanv.stan
- base_age_fsq_mobility_200615e_gqs.stan
- base_age_fsq_mobility_200615f_cmdstanv.stan
- base_age_fsq_mobility_200615f_gqs.stan
- base_age_fsq_mobility_200615g_cmdstanv.stan
- base_age_fsq_mobility_200615g_gqs.stan
- base_age_fsq_mobility_200615h_cmdstanv.stan
- base_age_fsq_mobility_200615h_gqs.stan
- base_age_fsq_mobility_200615i_cmdstanv.stan
- base_age_fsq_mobility_200615i_gqs.stan
- base_age_fsq_mobility_200617_cmdstanv.stan
- base_age_fsq_mobility_200618_cmdstanv.stan
- base_age_fsq_mobility_200618_gqs.stan
- base_age_fsq_mobility_200619_cmdstanv.stan
- base_age_fsq_mobility_200619b_cmdstanv.stan
- base_age_fsq_mobility_200619b_gqs.stan
- base_age_fsq_mobility_200619c_cmdstanv.stan
- base_age_fsq_mobility_200619c_gqs.stan
- base_age_fsq_mobility_200619d_cmdstanv.stan
- base_age_fsq_mobility_200619d_gqs.stan
- base_age_fsq_mobility_200619e_cmdstanv.stan
- base_age_fsq_mobility_200619e_gqs.stan
- base_age_fsq_mobility_200624a_cmdstanv.stan
- base_age_fsq_mobility_200624a_gqs.stan
- base_age_fsq_mobility_200624b_cmdstanv.stan
- base_age_fsq_mobility_200624b_gqs.stan
- base_age_fsq_mobility_200624c_cmdstanv.stan
- base_age_fsq_mobility_200624c_gqs.stan
- base_age_fsq_mobility_200625a_cmdstanv.stan
- base_age_fsq_mobility_200625a_gqs.stan
- base_age_fsq_mobility_200625b_cmdstanv.stan
- base_age_fsq_mobility_200625b_gqs.stan
- base_age_fsq_mobility_200625c_cmdstanv.stan
- base_age_fsq_mobility_200625c_gqs.stan
- base_age_fsq_mobility_200630a_cmdstanv.stan
- base_age_fsq_mobility_200630a_gqs.stan
- base_age_fsq_mobility_200630b_cmdstanv.stan
- base_age_fsq_mobility_200630b_gqs.stan
- base_age_fsq_mobility_200630c_cmdstanv.stan
- base_age_fsq_mobility_200630c_gqs.stan
- base_age_fsq_mobility_200630d_cmdstanv.stan
- base_age_fsq_mobility_200630d_gqs.stan
- base_age_fsq_mobility_200630e_cmdstanv.stan
- base_age_fsq_mobility_200630e_gqs.stan
- base_age_fsq_mobility_200630f_cmdstanv.stan
- base_age_fsq_mobility_200630f_gqs.stan
- base_age_fsq_mobility_200630g_cmdstanv.stan
- base_age_fsq_mobility_200630g_gqs.stan
- base_age_fsq_mobility_200703a_cmdstanv.stan
- base_age_fsq_mobility_200703a_gqs.stan
- base_age_fsq_mobility_200703b_cmdstanv.stan
- base_age_fsq_mobility_200703b_gqs.stan
- base_age_fsq_mobility_200703c_cmdstanv.stan
- base_age_fsq_mobility_200703c_gqs.stan
- base_age_fsq_mobility_200703d_cmdstanv.stan
- base_age_fsq_mobility_200703d_gqs.stan
- base_age_fsq_mobility_200703e_cmdstanv.stan
- base_age_fsq_mobility_200703e_gqs.stan
- base_age_fsq_mobility_200703f_cmdstanv.stan
- base_age_fsq_mobility_200703f_gqs.stan
- base_age_fsq_mobility_200703f_gqs_200709.stan
- base_age_fsq_mobility_200703g_cmdstanv.stan
- base_age_fsq_mobility_200703g_gqs.stan
- base_age_fsq_mobility_200703h_cmdstanv.stan
- base_age_fsq_mobility_200703h_gqs.stan
- base_age_fsq_mobility_200703i_cmdstanv.stan
- base_age_fsq_mobility_200703i_gqs.stan
- base_age_fsq_mobility_200703j2_cmdstanv.stan
- base_age_fsq_mobility_200703j2_gqs.stan
- base_age_fsq_mobility_200703j3_cmdstanv.stan
- base_age_fsq_mobility_200703j3_gqs.stan
- base_age_fsq_mobility_200703j_cmdstanv.stan
- base_age_fsq_mobility_200703j_gqs.stan
- base_age_fsq_mobility_200703k_cmdstanv.stan
- base_age_fsq_mobility_200703k_gqs.stan
- base_age_fsq_mobility_200703l_cmdstanv.stan
- base_age_fsq_mobility_200703l_gqs.stan
- base_age_fsq_mobility_200703m2_cmdstanv.stan
- base_age_fsq_mobility_200703m2_gqs.stan
- base_age_fsq_mobility_200703m3_cmdstanv.rds
- base_age_fsq_mobility_200703m3_cmdstanv.stan
- base_age_fsq_mobility_200703m3_gqs.stan
- base_age_fsq_mobility_200703m4_cmdstanv.stan
- base_age_fsq_mobility_200703m4_gqs.stan
- base_age_fsq_mobility_200703m5_cmdstanv.stan
- base_age_fsq_mobility_200703m5_gqs.stan
- base_age_fsq_mobility_200703m6_cmdstanv.stan
- base_age_fsq_mobility_200703m6_gqs.stan
- base_age_fsq_mobility_200703m_cmdstanv.stan
- base_age_fsq_mobility_200703m_gqs.stan
- base_age_fsq_mobility_200703n3_cmdstanv.stan
- base_age_fsq_mobility_200703n3_gqs.stan
- base_age_fsq_mobility_200704a_cmdstanv.stan
- base_age_fsq_mobility_200704a_gqs.stan
- base_age_fsq_mobility_200724a1_cmdstanv.stan
- base_age_fsq_mobility_200724a1_gqs.stan
- base_age_fsq_mobility_200724a2_cmdstanv.stan
- base_age_fsq_mobility_200724a2_gqs.stan
- base_age_fsq_mobility_200724a3_cmdstanv.stan
- base_age_fsq_mobility_200724a3_gqs.stan
- base_age_fsq_mobility_200724a4_cmdstanv.stan
- base_age_fsq_mobility_200724a4_gqs.stan
- base_age_fsq_mobility_200724a5_cmdstanv.stan
- base_age_fsq_mobility_200724a5_gqs.stan
- base_age_fsq_mobility_200724a6_cmdstanv.stan
- base_age_fsq_mobility_200724a6_gqs.stan
- base_age_fsq_mobility_200724b3_cmdstanv.stan
- base_age_fsq_mobility_200724b3_gqs.stan
- base_age_fsq_mobility_200724b4_cmdstanv.stan
- base_age_fsq_mobility_200724b4_gqs.stan
- base_age_fsq_mobility_200724b5_cmdstanv.stan
- base_age_fsq_mobility_200724b5_gqs.stan
- base_age_fsq_mobility_200724b6_cmdstanv.stan
- base_age_fsq_mobility_200724b6_gqs.stan
- base_age_fsq_mobility_200724c1_cmdstanv.stan
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- base_age_google_mobility_200512_cmdstanv.stan
- base_age_google_mobility_200513.stan
- base_age_google_mobility_200513_cmdstanv.stan
- base_age_google_mobility_200514_cmdstanv.stan
- base_age_google_mobility_200516_cmdstanv.stan
- base_age_google_mobility_200517_cmdstanv.stan
- base_age_google_mobility_200519_cmdstanv.stan
- base_age_google_mobility_200520_cmdstanv.stan
- base_age_google_mobility_200520b_cmdstanv.stan
- base_age_google_mobility_200520c_cmdstanv.stan
- base_age_google_mobility_200521.stan
- base_age_google_mobility_200524_cmdstanv.stan
- base_age_google_mobility_200525_cmdstanv.stan
- base_age_google_mobility_200525b_cmdstanv.stan
- base_age_google_mobility_200529_cmdstanv.stan
- base_age_google_mobility_200529_cmdstanvb.stan
- base_age_google_mobility_200530_cmdstanv.stan
- base_age_google_mobility_200530b_cmdstanv.stan
- base_age_google_mobility_200602_cmdstanv.stan
- base_age_google_mobility_200602b_cmdstanv.stan
- base_age_google_mobility_200605_cmdstanv.stan
- base_age_google_mobility_200610_cmdstanv.stan
- base_age_google_resnonrestrends_200602_cmdstanv.stan
- base_age_google_resnonrestrends_200602b_cmdstanv.stan
- normal_linear_model.stan
- normal_linear_model2.stan
- summary_stan_models.txt
- .DS_Store
- .DS_Store
- explore-emodo-mobility-contacts.R
- explore.r
- fit_ts_model_county.R
- preprocess-append-foursquare-mobility.r
- preprocess-contact-rates.r
- preprocess-death-data.R
- preprocess-ifr-by-age-prior.r
- save-Brazeau-ifr-by-age-prior.R
- save-Levin-ifr-by-age-prior-v7.R
- save-Levin-ifr-by-age-prior.r
- save-OR-Zhang-table.R
- save-outbreak-contact-matrix-China-UK.r
- save-US-NPI.r
- save-Verity-ifr-by-age-prior.r
- .DS_Store
- generate-quantities-forecast-v110.r
- generate-quantities-forecast-v120.r
- generate-quantities-forecast.r
- generate-quantities-new-strain.R
- generate-quantities.r
- generate-shielding-forecasts.r
- post-processing-age-pars.R
- post-processing-assess-mixing.R
- post-processing-compare-fsq-emodo-data.R
- post-processing-deathsage-casesage-plot-v110.R
- post-processing-deathsage-casesage-plot-v120.R
- post-processing-deathsage-casesage-plot.R
- post-processing-etas.R
- post-processing-flows.R
- post-processing-forecast-contributions.r
- post-processing-forecast-increase-deaths-cases.r
- post-processing-forecast-increase-Rt.r
- post-processing-forecast-plot-cases.R
- post-processing-forecast-plot-deaths.r
- post-processing-forecast-shielding-plot-death.r
- post-processing-fsq-mobility-analysis.R
- post-processing-knit-report-forecast.r
- post-processing-knit-report.R
- post-processing-log-likelihood.r
- post-processing-make-aRt-allstates-plot.R
- post-processing-make-attackrate-tables.R
- post-processing-make-daily-weekly-deaths-expected-observed-plot.R
- post-processing-make-deaths-eacases-Rt-plot.R
- post-processing-make-deaths-mobility-contacts-plot.R
- post-processing-make-deaths-panel-plot.R
- post-processing-make-eacases-eff-over-time-plot.R
- post-processing-make-figure-0.R
- post-processing-make-five-panel-plot.R
- post-processing-make-flow-byage-table.R
- post-processing-make-ifr-table.R
- post-processing-make-newcases-overalldeaths-Rt-plot.R
- post-processing-make-prop-susceptible-byage-plot.R
- post-processing-make-report-forecast-report32.Rmd
- post-processing-make-report-forecast.Rmd
- post-processing-make-report-new-strain.Rmd
- post-processing-make-report.Rmd
- post-processing-make-Rt-byage-table.R
- post-processing-make-Rtlessthan1-classifications.R
- post-processing-new-strain-make-deaths-cases-plot.R
- post-processing-new-strain-make-Rt-plot.R
- post-processing-plot-age-newcases.R
- post-processing-sensitivity-age-seed-new-cases-contribution.R
- post-processing-sensitivity-antibody.R
- post-processing-sensitivity-attackrate.R
- post-processing-sensitivity-mltp_cntct_school_close-contact_patterns.r
- post-processing-sensitivity-mltp_cntct_school_close-Rt-contribution.r
- post-processing-sensitivity-mltp_cntct_school_close.sh
- post-processing-sensitivity-Rt-contribution.R
- post-processing-sensitivity-two-models.sh
- post-processing-state-pars.R
- post-processing-summarise-antibody.R
- post-processing-test-flows.R
- post-processing-validate-attackrates.R
- pre-processing-death-data-jhu.R
- pre-processing-death-data-nyt.R
- pre-processing-interventions.R
- save-posterior-samples-forecast-shielding.R
- save-posterior-samples-forecast.R
- save-posterior-samples-new-strain.R
- save-posterior-samples.R
- stan-convert-csv-to-rda.r
- stan-make-data-usa-dev.r
- stan-make-data-usa-report32.r
- stan-make-data-usa-v110.r
- stan-make-data-usa-v120.r
- stan-save-stanfit-model-comparison.r
- .DS_Store
- base_age_fsq_mobility_201015i1_cmdstanv.stan
- base_age_fsq_mobility_201015i1_gqs.stan
- base_age_fsq_mobility_201015i2_cmdstanv.stan
- base_age_fsq_mobility_201015i2_gqs.stan
- base_age_fsq_mobility_201015i3_cmdstanv.stan
- base_age_fsq_mobility_201015i3_gqs.stan
- base_age_fsq_mobility_201015i4_cmdstanv.stan
- base_age_fsq_mobility_201015i4_gqs.stan
- base_age_fsq_mobility_201015i4_gqs_new_strain.stan
- base_age_fsq_mobility_201015i5_cmdstanv.stan
- base_age_fsq_mobility_201015i5_gqs.stan
- base_age_fsq_mobility_201015i6_cmdstanv.stan
- base_age_fsq_mobility_201015i6_gqs.stan
- base_age_fsq_mobility_201015i8_cmdstanv.stan
- base_age_fsq_mobility_201015i8_gqs.stan
- covid19AgeModel_report32_cmdstanv.stan
- covid19AgeModel_report32_gqs.stan
- covid19AgeModel_v110_cmdstanv.stan
- covid19AgeModel_v110_gqs.stan
- covid19AgeModel_v120_cmdstanv.stan
- covid19AgeModel_v120_gqs.stan
- .DS_Store
- make-analysis-covid19AgeModel-dev-HPC.R
- make-analysis-covid19AgeModel-report32-bash.R
- make-analysis-covid19AgeModel-report32-demo-bash.R
- make-analysis-covid19AgeModel-report32-HPC.R
- make-analysis-covid19AgeModel-v110-bash.R
- make-analysis-covid19AgeModel-v110-demo-bash.R
- make-analysis-covid19AgeModel-v110-HPC.R
- make-analysis-covid19AgeModel-v120-bash.R
- make-analysis-covid19AgeModel-v120-demo-bash.R
- make-analysis-covid19AgeModel-v120-HPC.R
- data-plotting-functions.r
- data-usa-read-functions.r
- post-processing-plot-functions.r
- post-processing-summary-functions.r
- post-processing-table-functions.r
- stan-functions.r
- stan-utility.R
- utils-alternative-gamma-functions.r
- utils-numbers-for-reporting.r
- utils-school.r
- .DS_Store
- covid19AgeModel.yml
- DESCRIPTION
- LICENSE-code-CC-BY-4.0.txt
- LICENSE-Emodo-data-CC-BY-NC-4.0.txt
- LICENSE-Foursquare-data-CC-BY-NC-ND-4.0.txt
- LICENSE-mortality-data-CC-BY-4.0.txt
- NAMESPACE
- README.md
- TITLE
- ages.csv
- contact-matrices.rds
- country-inputs.rds
- COVID-19-up-to-date.csv
- COVID-19-up-to-date.rds
- fetch-ecdc.r
- interventions.csv
- popt_ifr.csv
- regions.csv
- serial_interval.csv
- severity-inputs.rds
- test_stan_models_identical_lp.R
- Dockerfile
- README.md
- run_model_script.sh
- .gitkeep
- format-data-plotting.r
- make-plots.r
- make-rt-plot.r
- make-scenario-plots-top7.r
- make-scenario-plots.r
- make-three-panel-plots.r
- base-italy.stan
- simulate.stan
- make-table.r
- process-covariates-italy.r
- read-data-subnational.r
- simulate-regional.r
- dpc-covid19-ita-regioni.csv
- Global_Mobility_Report.csv
- Italy_events.csv
- Italy_interventions.csv
- province_name_translation.csv
- weighted_ifrs_italy.csv
- .gitkeep
- .gitkeep
- COVID-19-up-to-date.rds
- interventions.rds
- popt-ifr.rds
- regions.rds
- serial-interval.rds
- .gitkeep
- .gitkeep
- base-nature.stan
- covariate-size-effects.r
- format-data.r
- geom-stepribbon.r
- make-table.r
- plot-3-panel.r
- process-covariates.r
- environment.yml
- README.md
- Test.ipynb
- dataset.py
- util.py
- requirements.txt
- .gitkeep
- base.stan
- base_general.stan
- base_general_speed.stan
- base_general_speed2.stan
- aggregates_infections_rt.rds
- all_statc_combined.csv
- npis_23Mar_02Dec.csv
- rt_covars_combined.rds
- backdate_tiers.R
- create_data.R
- 2stage_LFM_non_centered.stan
- spline_LFA.R
- process-death-data-jhu.r
- process-death-data-nyt.r
- process-interventions.r
- covariate-effect-sizes.r
- format-data-plotting.r
- infectiousness-plots.r
- make-plots.r
- make-rt-percentage-map.r
- make-rt-plot.r
- make-scenario-plots.r
- make-three-panel-plots.r
- make_rt_plot.R
- base-usa-cases.stan
- base-usa.stan
- simulate-usa.stan
- get-visitdata.sh
- mobility-regression.r
- visitdata-grouped.csv
- calculate-infectiousness.r
- create-output-files.r
- process-covariates-usa-cases.r
- process-covariates.r
- read-data-usa-cases.r
- read-data-usa.r
- scrape-required-data.r
- simulate.r
- cb_2018_us_state_20m.cpg
- cb_2018_us_state_20m.dbf
- cb_2018_us_state_20m.prj
- cb_2018_us_state_20m.shp
- cb_2018_us_state_20m.shp.ea.iso.xml
- cb_2018_us_state_20m.shp.iso.xml
- cb_2018_us_state_20m.shx
- covariates.RDS
- covariates_all.csv
- covariates_all_cases.rds
- covariates_all_cases_ended.rds
- covariates_ended.csv
- covariates_ended.RDS
- Global_Mobility_Report.csv
- google-mobility-forecast.csv
- interventions_all.RDS
- jhu_death_data_padded.rds
- nyt_death_data_padded.rds
- states.csv
- states_mapping_file.tsv
- us_population.rds
- us_states_age.rds
- us_states_wide.rds
- usa-regions.csv
- USA_Google_Mobility.csv
- USstatesCov19distancingpolicy.csv
- weighted_ifr.RDS
- weighted_ifr_states.RDS
- .gitkeep
- .gitkeep
- geom-stepribbon.r
- get-ar.r
- process-covariates.r
- read-data.r
- .dockerignore
- .gitattributes
- .gitignore
- base-Brazil.r
- base-Italy.r
- base-nature.r
- base-usa-cases.r
- base-usa.r
- base.r
- base_general.r
- compute-ifr-europe.r
- compute-ifr-usa.r
- contributing.md
- covariate-size-effects.r
- covid19model.Rproj
- environment.yml
- LICENSE
- make-table.r
- plot-3-panel.r
- plot-forecast.r
- README.md
- Technical_description_of_Imperial_COVID_19_Model.pdf
- web-fetch-and-run.r
- web-verify-output.r
# CDN으로 사용하기
jsDelivrjsDelivr는 공개 GitHub 리포지토리를 별도 설정 없이 CDN으로 즉시 서빙합니다. 버전과 파일을 고르면 웹페이지에 바로 붙일 수 있는 링크와 예시 코드가 만들어집니다.
명령어 용어집
이 문서에서 사용된 명령어를 모아봤습니다. 낯선 명령어가 있다면 펼쳐서 확인해보세요.
conda activate
설명 보기 ▼
conda activate
Activate a conda environment.
See also: `conda deactivate`.
conda activate myenv
Activate an existing environment named `myenv`:
conda activate {{path/to/myenv}}
Activate an existing environment located at custom path:
conda activate --stack myenv
Stack `myenv` environment on top of a previous environment making libraries/commands/variables from both accessible:
conda env
설명 보기 ▼
conda env
Manage conda environments.
conda env create {{[-f|--file]}} {{path/to/file}}
Create an environment from an environment file (YAML, TXT, etc.):
conda env remove {{[-n|--name]}} {{environment_name}}
Delete an environment and everything in it:
conda env update {{[-f|--file]}} {{path/to/file}} --prune
Update an environment based on an environment file:
