Cello-v2-1-Core

(★ 21)

Streamlined Cello Algorithm. Feed it Verilog and UCF from CIDARLAB/CELLO-UCF, and run celloAlgo.py in terminal to make genetic circuit designs locally on your machine.

Owner Repos

cello ★ 874

Genetic circuit design automation

Java
3DuF ★ 83

Interactive microfluidic design editor

TypeScript
Cello-v2 ★ 74

Cello v2 is the continuation of the Cello genetic circuit design software.

Java
DAFD ★ 17

No description provided.

Python
knox ★ 15

Full stack application for creating, combining, and storing combinatorial genetic design spaces.

Java
uDrop-Generation ★ 13

No description provided.

Python

File Explorer

ZIP Download
  • .dockerignore
  • .gitignore
  • config.py
  • Dockerfile
  • License.txt
  • README.md
  • requirements.txt
  • run.py

# Use via CDN

jsDelivr

jsDelivr serves any public GitHub repository as a CDN with zero setup. Pick a version and a file to get a ready-to-paste link and snippet.

Link
Example

Command Glossary

Commands referenced in this DOCs, explained below.

🔍

brew install

View Details ▼

Install a Homebrew formula or cask.

brew install {{formula|cask}}

Install a formula/cask:

brew install {{[-s|--build-from-source]}} {{formula}}

Build and install a formula from source (dependencies will still be installed from bottles):

brew install {{[-n|--dry-run]}} {{formula|cask}}

Download the manifest, print what would be installed but don't actually install anything:

🔍

docker build

View Details ▼

Build an image from a Dockerfile.

docker build .

Build a Docker image using the Dockerfile in the current directory:

docker build {{github.com/creack/docker-firefox}}

Build a Docker image from a Dockerfile at a specified URL:

docker build {{[-t|--tag]}} {{name:tag}} .

Build a Docker image and tag it:

🔍

docker pull

View Details ▼

This command is an alias of `docker image pull`.

tldr docker image pull

View documentation for the original command:

🔍

docker run

View Details ▼

This command is an alias of `docker container run`.

tldr docker container run

View documentation for the original command:

🔍

dot

View Details ▼

Render an image of a `linear directed` network graph from a `graphviz` file.
Layouts: `dot`, `neato`, `twopi`, `circo`, `fdp`, `sfdp`, `osage` & `patchwork`.

dot -T {{png}} -O {{path/to/input.gv}}

Render a PNG image with a filename based on the input filename and output format (uppercase -O):

dot -T {{svg}} -o {{path/to/image.svg}} {{path/to/input.gv}}

Render a SVG image with the specified output filename (lowercase -o):

dot -T {{format}} -O {{path/to/input.gv}}

Render the output in PS, PDF, SVG, Fig, PNG, GIF, JPEG, JSON, or DOT format:

🔍

git clone

View Details ▼

Clone an existing repository.

git clone {{remote_repository_location}} {{path/to/directory}}

Clone an existing repository into a new directory (the default directory is the repository name):

git clone --recursive {{remote_repository_location}}

Clone an existing repository and its submodules:

git clone {{[-n|--no-checkout]}} {{remote_repository_location}}

Clone only the `.git` directory of an existing repository:

🔍

pip install

View Details ▼

Install Python packages.

pip install {{package1 package2 ...}}

Install one or more packages:

pip install {{package1 package2 ...}} {{[-U|--upgrade]}}

Upgrade all specified packages to the latest version, installing any that are not already present:

pip install {{package}}=={{version}}

Install a specific version of a package:

🔍

python

View Details ▼

Python language interpreter.

python

Start a REPL (interactive shell):

python {{path/to/file.py}}

Execute a specific Python file:

python -i {{path/to/file.py}}

Execute a specific Python file and start a REPL:

// repository documentation