r-hta-workshop-2025

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r-hta-workshop-2025

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Content for R-HTA 2025

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- 20250610 R HTA workshop R O'Leary v1.0.pdf
- AaronWinn.pdf
- Ayman Sadek.pdf
- Baris Deniz.pdf
- David McAllister.pdf
- Dominic Muston.pdf
- Harriet Fewster.pdf
- Hong Xiao.pdf
- Jack Ettinger.pdf
- Javier Sanchez.pdf
- Jesus Rodriguez.pdf
- Luke Hardcastle.pdf
- Mei Chan.pdf
- Máté Szilcz_extRpolateS_RforHTA_2025-06-10.pdf
- Nathan Green HTML.html
- Olivia Adair.pdf
- Raymond Henderson.pdf
- RforHTA25 Zachary Waller.pdf
- RobertSmith-AutomatedReporting.pdf
- Rose Hart-defining barriers.pdf
- Samyshkin_Ward_Defining and Overcoming Barriers to R.pdf
- Sven Klijn.pdf
- Thom R-to-Excel POC 6June2025.pdf
README.md

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This repository contains open-source code examples from the R-HTA workshop held on 6th -10th June 2025.

For more information please see the [main website](https://r-hta.org/project/workshop/), or contact Robert Smith at [rsmith@darkpeakanalytics.com](mailto:rsmith@darkpeakanalytics.com).

## Materials

Links to external materials can be found in the table below, thanks to the DPA team for updating this throughout the workshop as new slides were made available.

### Friday 6th June 2025

| Author                  | Title                                                                         | Institution                                          | Links           |
| ----------------        | ----------                                                                    |   ----------                                         |  ----------------- |
| Eline Krijkamp  | From spreadsheet to script: Streamlining data collection and probabilistic sensitivity analysis with Excel and R | Erasmus University Rotterdam       | [Slides](https://darth-git.github.io/spreadsheet_to_R_psa_dataset/#/title-slide)            |
| Ayman Sadek	  | Discrete event simulation and treatment sequencing cost-effectiveness model in second line highly active relapse remitting multiple sclerosis for a NICE Multiple Technology Appraisal | University of Bristol Technology Assessment Group (TAG)       | [Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/Ayman%20Sadek.pdf)|
| Javier Sanchez Alvarez  | Unlocking Discrete Event Simulation Modelling in R using WARDEN | Abbvie       | [Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/Javier%20Sanchez.pdf); [WARDEN package](https://jsanchezalv.github.io/WARDEN/)              |
| Robert Smith  | Automating Economic Evaluation Reports Using R, RMarkdown, and LLMs | Dark Peak Analytics       | [Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/RobertSmith-AutomatedReporting.pdf); [bibby package](https://github.com/dark-peak-analytics/bibby)              |
| Stijn Peeters  | Measuring Mental Health Quality of Life in R: A Psychometric Evaluation and Standardised MHQoL Toolbox | Erasmus School of Health Policy & Management       | [Slides](https://stijnbpeeters.github.io/RforHTA/#/title-slide)              |
| Raymond Henderson  | Mapping the Landscape of Open Source Health Economic Models: A Systematic Database Review and Analysis: An ISPOR Special Interest Group Report | Salutem Insights Ltd       | [Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/Raymond%20Henderson.pdf) ; [paper](https://www.sciencedirect.com/science/article/pii/S1098301525000609)           |
| Mei Sum Chan  | Automated NMA Results Slide Generation with multiNMA in R: Streamlining Evidence Synthesis | LCP Health Analytics       | [Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/Mei%20Chan.pdf); [multiNMA package](https://dmphillippo.github.io/multinma/)              |
| Howard Thom  | Proof-of-concept for automatic export of Excel versions of R health economic models | University of Bristol       | [Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/Thom%20R-to-Excel%20POC%206June2025.pdf); [Code](https://github.com/Bogdasayen/R-to-Excel-POC)         |
| Nathan Green  | A Framework for Linked Models in Cost-Effectiveness Analyses | UCL       | [html slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/Nathan%20Green%20HTML.html) (download and open in browser)           |
| Jack Ettinger	  | Making an R model that is fit for most purposes in the pharmaceutical industry: A global proof-of-concept cost-effectiveness template model in R | Parexel       | [Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/Jack%20Ettinger.pdf)              |

### Monday 9th June 2025

| Author                  | Title                                                                         | Institution                                          | Links           |
| ----------------        | ----------                                                                    |   ----------                                         |  ----------------- |
| Harriet Fewster  | Investigating Input Correlation in Probabilistic Sensitivity Analysis | York Health Economics Consortium Ltd       | [Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/Harriet%20Fewster.pdf)            |
| Olivia Adair  | A Shiny New Way to Evaluate Bowel Cancer Screening in Northern Ireland | Queen’s Univeristy Belfast	       | [Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/Olivia%20Adair.pdf)            |
| Luke Hardcastle	  | The diffusion piecewise exponential model for survival extrapolation | Dept. Statistical Science, University College London	       | [Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/Luke%20Hardcastle.pdf)           |
| Zachary Waller	  |Blistering speed - is Rcpp really so scary? | Queen’s Univeristy Belfast		       | [Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/RforHTA25%20Zachary%20Waller.pdf)            |
| Ahmed Abdelsabour	  |Visualising Non-Inferiority: An R Shiny Tool for Indirect Comparisons | PenTAG, University of Exeter		       | Slides TBC            |
| Hesam Ghiasvand	  |Revealing Subgroup Cost-Effectiveness Using Group-Based Trajectory Modelling: A Simulation on the findings of a study in Maternal Health During Birth | Coventry University		       | Slides TBC            |
| David McAllister	  |RESIDE - RESIDE: Rapid Easy Synthesis to Inform Data Extraction | University of Glasgow		       | [Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/David%20McAllister.pdf); [RESIDE package](https://hehta.github.io/RESIDE/)            |
| Jesus Perez	  |TableTidier: Extracting and Harmonising Tabular Data for Secondary Research | University of Glasgow / Datasky		       | [Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/Jesus%20Rodriguez.pdf) |
| Dominic Muston, Gregory Chen, Anders Gorst-Rasmussen, Robert Hettle	  |Enhancing Cooperation Between Clinical Evidence Generation and Economic Modeling in HTA: How R Can Help | MSD, Novo Nordisk, AstraZeneca		       | [Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/Dominic%20Muston.pdf)            |

### Tuesday 10th June 2025

| Author                  | Title                                                                         | Institution                                          | Links           |
| ----------------        | ----------                                                                    |   ----------                                         |  ----------------- |
| Frederick W. Thielen  | tatooheene: The R Package Toolbox for Health Economic Evaluations Aligned with the Dutch Guideline | Erasmus School of Health Policy & Management       | Slides TBC            |
| Aaron Winn	  | Building Efficient Microsimulation Models in R: A How-To Guide | University of Illinois Chicago       | [Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/AaronWinn.pdf)           |
| Hong Xiao, Karam Diaby & Zhen Zhang	  | Enhancing HTA model adaptations with AI: Leveraging large language models and R-Shiny for local cost-effectiveness analyses | Otsuka Pharmaceuticals, Inc       | [Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/Hong%20Xiao.pdf)            |
| Mate Szilcz  | extRpolateS: A Shiny-Based Interactive Platform for Time-to-Event Data Modeling in Health Technology Assessments | Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden       | [Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/M%C3%A1t%C3%A9%20Szilcz_extRpolateS_RforHTA_2025-06-10.pdf)            |
| Rachel O’Leary	  | Robot-assisted surgery for orthopaedic procedures: a rapid economic evaluation using rdecision | Newcastle upon Tyne Hospitals NHS Foundation Trust (NuTH)       | [Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/20250610%20R%20HTA%20workshop%20R%20O'Leary%20v1.0.pdf)            |
| Jorge Roa  | Accurate uncertainty quantification in Bayesian calibration accounting for correlated targets | Department of Health Policy, Stanford University School of Medicine	       | Slides TBC            |
| Baris Deniz  | Augmenting Health Economic Model Report Creation with LLMs | AIde Solutions       | [Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/Baris%20Deniz.pdf)            |
| Rose Hart, Sven Klijn, Yevgeniy Samyshkin and Tom Ward  | Defining and Overcoming Barriers to R in Health Economic Assessments: Insights and Pathways Forward | Dark Peak Analytics, Bristol Myers Squibb, GlaxoSmithKline       | [Rose's Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/Rose%20Hart-defining%20barriers.pdf); [Sven's Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/Sven%20Klijn.pdf); [Yevgeniy and Tom's Slides](https://github.com/r-hta/r-hta-workshop-2025/blob/main/content/Samyshkin_Ward_Defining%20and%20Overcoming%20Barriers%20to%20R.pdf)            |

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