proteinsolver

(★ 58)

Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.

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최종 버전 다운로드 (.zip)

- - meta.yaml
- - 1n5uA03-distance-matrix.txt
  - Dockerfile
  - entrypoint.sh
  - favicon.ico
  - README.md
- - download_docs.py
  - download_docs.sh
  - README.md
- Dockerfile
- e53-s1952148-d93703104.state
- - acknowledgements.svg
- - design-1n5u.pdf
  - design-1n5u.png
  - design-1n5u.svg
  - design-4beu.pdf
  - design-4beu.png
  - design-4beu.svg
  - design-4unu.pdf
  - design-4unu.png
  - design-4unu.svg
  - design-4z8j.pdf
  - design-4z8j.png
  - design-4z8j.svg
  - figure-s1.pdf
  - figure-s1.png
  - figure-s1.svg
  - figure-s2.pdf
  - figure-s2.png
  - figure-s2.svg
  - figure2-cellsys.pdf
  - figure2-cellsys.png
  - figure2-cellsys.svg
  - figure2.pdf
  - figure2.png
  - figure2.svg
  - overview.pdf
  - overview.png
  - overview.svg
- authors.md
- conf.py
- deployment.md
- index.rst
- installation.md
- make.bat
- Makefile
- modules.rst
- readme.md
- requirements.txt
- usage.md
- - GAPF_design_RUE_wt.csv
  - protherm_design_wt_RUE.csv
- - e12-s1652709-d6610836.state
- - 1n5uA03-weblogo-gen.svg
  - 1n5uA03-weblogo-wt.svg
- 01_generate_difficult_sudokus.ipynb
- 01_protein_interaction_dataset.ipynb
- 02_generate_difficult_sudokus.ipynb
- 02_prepare_dataset_beam.ipynb
- 02_prepare_dataset_manual.ipynb
- 04_protein_train.ipynb
- 04_sudoku_train-0a0fcd1d.ipynb
- 04_sudoku_train-4182ca3e.ipynb
- 04_sudoku_train-4264619e.ipynb
- 04_sudoku_train-5f2949e5.ipynb
- 04_sudoku_train-9236f2b7.ipynb
- 04_sudoku_train-94adb904.ipynb
- 04_sudoku_train.ipynb
- 04_sudoku_train_03.ipynb
- 05_select_best_model.ipynb
- 06_global_analysis_of_protein_folding_mutation.ipynb
- 06_global_analysis_of_protein_folding_stability.ipynb
- 06_predict_mutation_effect_timing.ipynb
- 06_protein_analysis.ipynb
- 06_sudoku_analysis.ipynb
- 07_protein_analysis_bestsel.ipynb
- 07_protein_analysis_figures.ipynb
- 10_generate_protein_sequences.ipynb
- 10_generate_protein_sequences_timing.ipynb
- 11_analyze_generated_sequences.ipynb
- 16_david_analysis.ipynb
- 16_david_analysis_quark.ipynb
- 16_protein_analysis_experimental.ipynb
- 17_profile_recovery.ipynb
- 18_profile_recovery.ipynb
- 18_profile_recovery_combined.ipynb
- 20_protein_demo.ipynb
- 20_sudoku_demo.ipynb
- 30_design_dashboard.ipynb
- 30_sudoku_dashboard.ipynb
- xx_graphic_abstract.ipynb
- - __init__.py
  - download_button.py
  - gpu_status.py
  - helper.py
  - msa_view.py
  - ps_process.py
  - run_proteinsolver.py
  - state.py
  - structure.py
  - target_selection.py
- - __init__.py
  - download.py
  - graph_labeling.py
  - nqueens.py
  - protein.py
  - protein_interaction.py
  - protein_v2.py
  - sudoku.py
  - sudoku_v2.py
- - __init__.py
  - proteinnet.py
- - __init__.py
  - activation.py
  - edge_conv_mod.py
  - functional.py
- - __init__.py
  - common.py
  - compression.py
  - network.py
  - protein_design.py
  - protein_sequence.py
  - protein_structure.py
  - scatter.py
  - sudoku.py
- __init__.py
- settings.py
- collect_figures.sh
- run_notebook_cpu.sh
- run_notebook_gpu.sh
- sugen.c
- - test_functional.py
- - test_protein_design.py
  - test_protein_structure.py
  - test_sudoku.py
  - test_sudoku.yaml
- test_attributes.py
.cookiecutter.yaml
.editorconfig
.gitattributes
.gitignore
.gitlab-ci.yml
.markdownlint.json
.pre-commit-config.yaml
.prettierrc.yaml
LICENSE
pyproject.toml
README.md
setup.cfg
setup.py

// repository documentation

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