allotropy
A Python library for converting instrument data into Allotrope Simple Model (ASM)
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- __init__.py
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- __init__.py
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- __init__.py
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- liquid_handler.py
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- mass_chromatogram_cube_detection.py
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- metabolite_detector.py
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- dpcr.py
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- solution_analyzer.py
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- spectrophotometry.py
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- spectrophotometry.py
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- surface_plasmon_resonance_binding_assay.py
- ultraviolet_absorbance_cube_detection.py
- ultraviolet_absorbance_spectrum_detection.py
- ultraviolet_absorbance_cube_detection.py
- ultraviolet_absorbance_spectrum_detection.py
- ultraviolet_absorbance_cube_detection.py
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- __init__.py
- __init__.py
- definitions.py
- quantity_values.py
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- __init__.py
- binding_affinity_analyzer.py
- cell_counting.py
- electrophoresis.py
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- flow_cytometry.py
- __init__.py
- __init__.py
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- liquid_chromatography.py
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- __init__.py
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- solution_analyzer.py
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- cell-counting-detector.schema.json
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- pressure-cube-detector.schema.json
- solvent-cube-detector.schema.json
- temperature-cube-detector.schema.json
- chromatography-detectors.schema.json
- chromatography-detectors.schema.json
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- hierarchy.schema.json
- manifest.schema.json
- core.schema.json
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- manifest.schema.json
- core.schema.json
- cube.schema.json
- hierarchy.schema.json
- manifest.schema.json
- core.schema.json
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- manifest.schema.json
- CHANGE_NOTES.md
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- fluorescence-imaging-point-detector.schema.json
- fluorescence-point-detector.schema.json
- light-obscuration-detector.schema.json
- CHANGE_NOTES.md
- liquid-chromatography.schema.json
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- mass-chromatogram-cube-detection.schema.json
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- BMG Labtech format.CSV
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- PHERAstar output file.CSV
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- Biacore_Insight_Transposed_FlowCells.json
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- Concentration Analysis.json
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- ED_Fig.1a_B2 binding.blr
- ED_Fig.1a_B2 binding.json
- ED_Fig.1a_B3 binding.blr
- ED_Fig.1a_B3 binding.json
- ED_Fig.6a_immobilization Her2-Her3.blr
- ED_Fig.6a_immobilization Her2-Her3.json
- Fig.2c_NC_prongs hybridization.blr
- Fig.2c_NC_prongs hybridization.json
- Fig.4b_Her3 immobilization.blr
- Fig.4b_Her3 immobilization.json
- Fig.5a_HD_immobilization Her2-Her3.blr
- Fig.5a_HD_immobilization Her2-Her3.json
- __init__.py
- to_allotrope_test.py
- biacore_evaluation_module_example.bme
- biacore_evaluation_module_example.json
- biacore_evaluation_module_example2.bme
- biacore_evaluation_module_example2.json
- biacore_evaluation_module_example3.bme
- biacore_evaluation_module_example3.json
- biacore_evaluation_module_example4.bme
- biacore_evaluation_module_example4.json
- __init__.py
- to_allotrope_test.py
- unicorn_1.json
- unicorn_1.zip
- unicorn_single_uv.json
- unicorn_single_uv.zip
- __init__.py
- to_allotrope_test.py
- Weyland_Yutani_checksum_correct.csv
- Weyland_Yutani_checksum_correct.json
- Weyland_Yutani_simple_correct.csv
- Weyland_Yutani_simple_correct.json
- __init__.py
- to_allotrope_test.py
- flowjo_example_1.json
- flowjo_example_1.wsp
- flowjo_example_2.json
- flowjo_example_2.wsp
- flowjo_example_3.json
- flowjo_example_3.wsp
- __init__.py
- flowjo_structure_test.py
- to_allotrope_test.py
- luminex_intelliflex_example_01.csv
- luminex_intelliflex_example_01.json
- luminex_intelliflex_single_dataset.csv
- luminex_intelliflex_single_dataset.json
- luminex_intelliflex_v2_1.csv
- luminex_intelliflex_v2_1.json
- luminex_intelliflex_v2_2.csv
- luminex_intelliflex_v2_2.json
- luminex_intelliflex_v2_2_excel.json
- luminex_intelliflex_v2_2_excel.xlsx
- luminex_intelliflex_v2_2_extended.csv
- luminex_intelliflex_v2_2_extended.json
- __init__.py
- to_allotrope_test.py
- luminex_xPONENT_example02.csv
- luminex_xPONENT_example02.json
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- luminex_xPONENT_example03.csv
- luminex_xPONENT_example03.json
- luminex_xPONENT_missing_optional_fields.csv
- luminex_xPONENT_missing_optional_fields.json
- luminex_xPONENT_NaN_and_not_reported_values.csv
- luminex_xPONENT_NaN_and_not_reported_values.json
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- luminex_xponent_structure_test.py
- to_allotrope_test.py
- mabtech_apex_example_multiplex_plate.json
- mabtech_apex_example_multiplex_plate.xlsx
- mabtech_apex_example_single_plate.json
- mabtech_apex_example_single_plate.xlsx
- mabtech_apex_example_single_plate2.json
- mabtech_apex_example_single_plate2.xlsx
- matech_apex_example.json
- matech_apex_example.xlsx
- __init__.py
- to_allotrope_test.py
- methodical_mind_384_wells.json
- methodical_mind_384_wells.txt
- methodical_test_1.json
- methodical_test_1.txt
- methodical_test_2.json
- methodical_test_2.txt
- methodical_test_3.json
- methodical_test_3.txt
- methodical_test_4_missing_spots.json
- methodical_test_4_missing_spots.txt
- methodical_test_5_mulitple_spot_tables.json
- methodical_test_5_mulitple_spot_tables.txt
- methodical_test_data_in_filename.json
- methodical_test_data_in_filename.txt
- methodical_mind_parser_test.py
- methodical_mind_reader_test.py
- methodical_mind_structure_test.py
- to_allotrope_test.py
- header_size_mismatch.txt
- lum_spectrum_columns.txt
- missing_kinetic_measurement.txt
- missing_measurement_table_row.txt
- multi-plate-block_non-unique_plate_ID.txt
- trf_well_scan_plates.txt
- abs_endpoint_plates.json
- abs_endpoint_plates.txt
- ACSINS_absorbance_timeformat_spectrum.json
- ACSINS_absorbance_timeformat_spectrum.txt
- fl_kinetic_plates.json
- fl_kinetic_plates.txt
- group_cols_with_int_sample_names.json
- group_cols_with_int_sample_names.txt
- group_with_partial_rows.json
- group_with_partial_rows.txt
- MD_SMP_absorbance_endpoint_example01.json
- MD_SMP_absorbance_endpoint_example01.txt
- MD_SMP_absorbance_endpoint_example02.json
- MD_SMP_absorbance_endpoint_example02.txt
- MD_SMP_absorbance_endpoint_example04.json
- MD_SMP_absorbance_endpoint_example04.txt
- MD_SMP_absorbance_endpoint_example05.json
- MD_SMP_absorbance_endpoint_example05.txt
- MD_SMP_absorbance_endpoint_partial_plate_example01.json
- MD_SMP_absorbance_endpoint_partial_plate_example01.txt
- MD_SMP_absorbance_endpoint_partial_plate_example02.json
- MD_SMP_absorbance_endpoint_partial_plate_example02.txt
- MD_SMP_absorbance_endpoint_partial_plate_example03.json
- MD_SMP_absorbance_endpoint_partial_plate_example03.txt
- MD_SMP_absorbance_endpoint_partial_plate_example04.json
- MD_SMP_absorbance_endpoint_partial_plate_example04.txt
- MD_SMP_absorbance_endpoint_partial_plate_example05.json
- MD_SMP_absorbance_endpoint_partial_plate_example05.txt
- MD_SMP_fluorescence_endpoint_example06.json
- MD_SMP_fluorescence_endpoint_example06.txt
- MD_SMP_fluorescence_endpoint_example07.json
- MD_SMP_fluorescence_endpoint_example07.txt
- MD_SMP_fluorescence_endpoint_partial_plate_example01.json
- MD_SMP_fluorescence_endpoint_partial_plate_example01.txt
- MD_SMP_fluorescence_endpoint_partial_plate_example02.json
- MD_SMP_fluorescence_endpoint_partial_plate_example02.txt
- MD_SMP_luminescence_endpoint_example03.json
- MD_SMP_luminescence_endpoint_example03.txt
- MD_SMP_luminescence_endpoint_example08.json
- MD_SMP_luminescence_endpoint_example08.txt
- MD_SMP_luminescence_endpoint_example09.json
- MD_SMP_luminescence_endpoint_example09.txt
- MD_SMP_luminescence_endpoint_partial_plate_example01.json
- MD_SMP_luminescence_endpoint_partial_plate_example01.txt
- MD_SMP_luminescence_endpoint_partial_plate_example02.json
- MD_SMP_luminescence_endpoint_partial_plate_example02.txt
- no_measurements.json
- no_measurements.txt
- partial_plate.json
- partial_plate.txt
- partial_plate_with_empty_values.json
- partial_plate_with_empty_values.txt
- softmaxpro_example_group_with_missing_calc_column.json
- softmaxpro_example_group_with_missing_calc_column.txt
- softmaxpro_example_reduced.json
- softmaxpro_example_reduced.txt
- softmaxpro_no_calc_docs.json
- softmaxpro_no_calc_docs.txt
- spectramax340_kinetic_partial_plate.json
- spectramax340_kinetic_partial_plate.txt
- spectrum_data.json
- spectrum_data.txt
- __init__.py
- to_allotrope_test.py
- methodical_test_1.json
- methodical_test_1.txt
- msd_workbench_test_1.csv
- msd_workbench_test_1.json
- msd_workbench_test_2.csv
- msd_workbench_test_2.json
- test_msd_workbench_xlsx.json
- test_msd_workbench_xlsx.xlsx
- __init__.py
- msd_workbench_calculated_data_test.py
- msd_workbench_structure_test.py
- to_allotrope_test.py
- missing_date_time.csv
- SampleResults2022-06-28_142558.csv
- SampleResults2022-06-28_142558.json
- SampleResultsDEVICE1232021-02-18_104838.csv
- SampleResultsDEVICE1232021-02-18_104838.json
- SampleResultsT123456789C2020-01-01_162647.csv
- SampleResultsT123456789C2020-01-01_162647.json
- __init__.py
- novabio_flex2_structure_test.py
- to_allotrope_test.py
- example01_missing_header_error.csv
- PE_Envision_absorbance_A450_example.csv
- PE_Envision_absorbance_A450_example.json
- PE_Envision_absorbance_example01.csv
- PE_Envision_absorbance_example01.json
- PE_Envision_extra_espaces.csv
- PE_Envision_extra_espaces.json
- PE_Envision_fluorescence_example01.csv
- PE_Envision_fluorescence_example01.json
- PE_Envision_fluorescence_example02.csv
- PE_Envision_fluorescence_example02.json
- PE_Envision_fluorescence_example03.csv
- PE_Envision_fluorescence_example03.json
- PE_Envision_fluorescence_example04.csv
- PE_Envision_fluorescence_example04.json
- PE_Envision_luminescence_example01.csv
- PE_Envision_luminescence_example01.json
- PE_Envision_missing_plate_maps.csv
- PE_Envision_missing_plate_maps.json
- __init__.py
- perkin_elmer_envision_structure_test.py
- to_allotrope_test.py
- qiacuity_dpcr_example01.csv
- qiacuity_dpcr_example01.json
- qiacuity_dpcr_example02.csv
- qiacuity_dpcr_example02.json
- qiacuity_dpcr_example03.csv
- qiacuity_dpcr_example03.json
- qiacuity_dpcr_example04.csv
- qiacuity_dpcr_example04.json
- __init__.py
- to_allotrope_test.py
- absorbance_endpoint_single_plate_example_01.csv
- absorbance_endpoint_single_plate_example_01.json
- fluorescence_endpoint_single_plate_example_01.csv
- fluorescence_endpoint_single_plate_example_01.json
- fluorescence_v3.5_pure_csv_format_example.csv
- fluorescence_v3.5_pure_csv_format_example.json
- luminescence_endpoint_single_plate_example_01.csv
- luminescence_endpoint_single_plate_example_01.json
- luminescence_v3.5_pure_csv_format_example.csv
- luminescence_v3.5_pure_csv_format_example.json
- optical_imaging_endpoint_single_plate_example_01.csv
- optical_imaging_endpoint_single_plate_example_01.json
- optical_imaging_endpoint_single_plate_example_02.csv
- optical_imaging_endpoint_single_plate_example_02.json
- optical_imaging_endpoint_single_plate_example_03.csv
- optical_imaging_endpoint_single_plate_example_03.json
- __init__.py
- to_allotrope_test.py
- Cellaca_Example1.json
- Cellaca_Example1.xlsx
- Cellaca_Example_1.csv
- Cellaca_Example_1.json
- revvity_matrix_1_csv.csv
- revvity_matrix_1_csv.json
- revvity_matrix_1_xlsx.json
- revvity_matrix_1_xlsx.xlsx
- __init__.py
- to_allotrope_test.py
- roche_cedex_bioht_example01.json
- roche_cedex_bioht_example01.txt
- roche_cedex_bioht_example02.json
- roche_cedex_bioht_example02.txt
- roche_cedex_bioht_example03.json
- roche_cedex_bioht_example03.txt
- roche_cedex_bioht_example04.json
- roche_cedex_bioht_example04.txt
- roche_cedex_bioht_example_with_mg_L.json
- roche_cedex_bioht_example_with_mg_L.txt
- roche_cedex_bioht_v5_example01.json
- roche_cedex_bioht_v5_example01.txt
- roche_cedex_bioht_v5_example02.json
- roche_cedex_bioht_v5_example02.txt
- roche_cedex_bioht_v5_multiple_detection_ranges.json
- roche_cedex_bioht_v5_multiple_detection_ranges.txt
- roche_cedex_bioht_v7_dilution_and_replicates.json
- roche_cedex_bioht_v7_dilution_and_replicates.txt
- roche_cedex_bioht_v7_example_01.json
- roche_cedex_bioht_v7_example_01.txt
- __init__.py
- roche_cedex_bioht_data.py
- roche_cedex_bioht_reader_test.py
- roche_cedex_bioht_structure_test.py
- to_allotrope_test.py
- roche_cedex_hires_example_1.csv
- roche_cedex_hires_example_1.json
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- roche_cedex_hires_example_3.csv
- roche_cedex_hires_example_3.json
- roche_cedex_hires_example_4.json
- roche_cedex_hires_example_4.xlsx
- __init__.py
- to_allotropy_test.py
- no_well_positions.xlsx
- SLA01P01_assay.json
- SLA01P01_assay.xlsx
- SLA01P01_ELISA.json
- SLA01P01_ELISA.xlsx
- SLA01P01_OD.json
- SLA01P01_OD.xlsx
- __init__.py
- to_allotrope_test.py
- thermo_fisher_genesys30_example_01.json
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- thermo_fisher_genesys30_example_02.csv
- thermo_fisher_genesys30_example_02.json
- __init__.py
- to_allotrope_test.py
- Genesys150_ExampleFile_Fixed_10_2_2024_1_57_42_PM.csv
- Genesys150_ExampleFile_Fixed_10_2_2024_1_57_42_PM.json
- __init__.py
- to_allotrope_test.py
- Thermo_NanoDrop_8000_example01.json
- Thermo_NanoDrop_8000_example01.txt
- Thermo_NanoDrop_8000_example02.json
- Thermo_NanoDrop_8000_example02.txt
- Thermo_NanoDrop_8000_example03.json
- Thermo_NanoDrop_8000_example03.txt
- Thermo_NanoDrop_8000_example04.json
- Thermo_NanoDrop_8000_example04.txt
- Thermo_NanoDrop_mRNA.json
- Thermo_NanoDrop_mRNA.txt
- __init__.py
- to_allotrope_test.py
- thermo_nanodrop_eight_example01.json
- thermo_nanodrop_eight_example01.txt
- thermo_nanodrop_eight_example02.json
- thermo_nanodrop_eight_example02.txt
- thermo_nanodrop_eight_RNA.json
- thermo_nanodrop_eight_RNA.txt
- thermo_nanodrop_eight_tab_aligned_header.json
- thermo_nanodrop_eight_tab_aligned_header.txt
- __init__.py
- to_allotrope_test.py
- dsDNA 7_19_2023 3_27_29 PM.csv
- dsDNA 7_19_2023 3_27_29 PM.json
- example1.json
- example1.xlsx
- __init__.py
- to_allotrope_test.py
- thermo_fisher_qubit4_example_1.csv
- thermo_fisher_qubit4_example_1.json
- thermo_fisher_qubit4_example_2.json
- thermo_fisher_qubit4_example_2.xlsx
- thermo_fisher_qubit4_example_3.csv
- thermo_fisher_qubit4_example_3.json
- thermo_fisher_qubit4_example_4.json
- thermo_fisher_qubit4_example_4.xlsx
- __init__.py
- to_allotropy_test.py
- thermo_fisher_qubit_flex_example_01.csv
- thermo_fisher_qubit_flex_example_01.json
- thermo_fisher_qubit_flex_example_02.json
- thermo_fisher_qubit_flex_example_02.xlsx
- thermo_fisher_qubit_flex_example_03.json
- thermo_fisher_qubit_flex_example_03.xlsx
- thermo_fisher_qubit_flex_example_sep_header.csv
- thermo_fisher_qubit_flex_example_sep_header.json
- __init__.py
- to_allotrope_test.py
- not_all_headers.csv
- Thermo_VISIONlite_example_rate.csv
- Fixed_tab_sep.csv
- Fixed_tab_sep.json
- Fixed_with_Result_Multi.csv
- Fixed_with_Result_Multi.json
- Thermo_VISIONlite_example_fixed.csv
- Thermo_VISIONlite_example_fixed.json
- Thermo_VISIONlite_example_multiple_wavelengths_fixed.csv
- Thermo_VISIONlite_example_multiple_wavelengths_fixed.json
- Thermo_VISIONlite_example_quant.csv
- Thermo_VISIONlite_example_quant.json
- Thermo_VISIONlite_example_scan.csv
- Thermo_VISIONlite_example_scan.json
- __init__.py
- to_allotrope_test.py
- luciferase_assay_example.json
- luciferase_assay_example.xlsx
- multi-plate_example01.json
- multi-plate_example01.xlsx
- skanit_data.json
- skanit_data.xlsx
- skanit_different_plate_pattern.json
- skanit_different_plate_pattern.xlsx
- __init__.py
- thermo_skanit_structure_test.py
- to_allotrope_test.py
- A260_dsDNA_without_wavelength_in_concentration_header.csv
- 2024-07-12_CW288_Plate1.json
- 2024-07-12_CW288_Plate1.xlsx
- 2024-07-16_CW288_Plate2.json
- 2024-07-16_CW288_Plate2.xlsx
- Demo_A260_dsDNA_Data.csv
- Demo_A260_dsDNA_Data.json
- Demo_A280_Protein.csv
- Demo_A280_Protein.json
- Example_Lunatic_Plate_Reader_csv_no_header.csv
- Example_Lunatic_Plate_Reader_csv_no_header.json
- Example_Lunatic_Plate_Reader_csv_with_header.csv
- Example_Lunatic_Plate_Reader_csv_with_header.json
- Example_Lunatic_Plate_Reader_xlsx_no_header.json
- Example_Lunatic_Plate_Reader_xlsx_no_header.xlsx
- Example_Lunatic_Plate_Reader_xlsx_with_header.json
- Example_Lunatic_Plate_Reader_xlsx_with_header.xlsx
- spectrum_measurement.csv
- spectrum_measurement.json
- Unchained_Labs_Stunner_example01.json
- Unchained_Labs_Stunner_example01.xlsx
- Unchained_Labs_Stunner_example02.json
- Unchained_Labs_Stunner_example02.xlsx
- Unchained_Labs_Stunner_example03.json
- Unchained_Labs_Stunner_example03.xlsx
- __init__.py
- to_allotrope_test.py
- unchained_labs_lunatic_structure_test.py
- HelloWorld.csv
- HelloWorld.xlsx
- HelloWorldTwoSheets.xlsx
- __init__.py
- dict_data_test.py
- encoding_test.py
- iterables_test.py
- locale_context_test.py
- locale_number_parser_test.py
- pandas_test.py
- strict_xml_element_test.py
- test_json.py
- timestamp_parser_test.py
- units_test.py
- uuids_test.py
- values_test.py
- xml_test.py
- __init__.py
- lines_reader_test.py
- __init__.py
- test_codegen.py
- test_fetcher.py
- test_generate.py
- test_generate_unit.py
- test_naming.py
- test_technique_resolver.py
- __init__.py
- conftest.py
- discover_vendor_test.py
- exceptions_test.py
- parser_factory_test.py
- to_allotrope_locale_test.py
- to_allotrope_test.py
- to_dataset_test.py
- .flake8
- .gitattributes
- .gitignore
- CHANGELOG.md
- CLAUDE.md
- CODEOWNERS
- CONTRIBUTING.md
- GOVERNANCE.md
- LICENSE.txt
- mypy.ini
- pyproject.toml
- README.md
- ruff.toml
- SUPPORTED_INSTRUMENT_SOFTWARE.adoc
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