HMS-BrainActivity-Analysiss

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HMS-BrainActivity-Analysiss

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Welcome to the GitHub repo for "HMS - EEG Exploration & Neurocritical Care Journey"! Explore EEG data, understand wave patterns, and delve into conditions like LPDs, GPDs, LRDA, and GRDA.

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<p align="center">
  <img src="https://img.mit.edu/files/images/202211/MIT-Neural-Networks-SL.gif" alt="Logo" width="700" height="400">
  <h3 align="center">🌩️ HMS - Exploratory Data Analysis and Journey in Neurocritical Care 🌍</h3>
  <p align="center">
    A comprehensive exploration into neurocritical care using EEG data analysis.
    <br />
    <a href="https://github.com/QMindSolutions/HMS-BrainActivity-Analysis/blob/main/docs/hms-eda-harmful-brain-activity.pdf"><strong>Explore the docs »</strong></a>
    <br />
    <br />
    <a href="https://github.com/QMindSolutions/HMS-BrainActivity-Analysis">View Demo</a>
    ·
    <a href="https://github.com/QMindSolutions/HMS-BrainActivity-Analysis/issues">Report Bug</a>
    ·
    <a href="https://github.com/QMindSolutions/HMS-BrainActivity-Analysis/issues">Request Feature</a>
  </p>
</p>

<details open="open">
  <summary>Table of Contents</summary>
  <ol>
    <li>
      <a href="#about-the-project">About The Project</a>
      <ul>
        <li><a href="#what-is-eeg">What is EEG?</a></li>
        <li><a href="#how-spectrograms-are-related-to-eeg">How Spectrograms are Related to EEG?</a></li>
        <li><a href="#lpd-gpd-lrda-grda-conditions">LPD/GPD/LRDA/GRDA Conditions</a></li>
      </ul>
    </li>
    <li>
      <a href="#getting-started">Getting Started</a>
      <ul>
        <li><a href="#prerequisites">Prerequisites</a></li>
        <li><a href="#installation">Installation</a></li>
      </ul>
    </li>
    <li><a href="#usage">Usage</a></li>
    <li><a href="#roadmap">Roadmap</a></li>
    <li><a href="#contributing">Contributing</a></li>
    <li><a href="#license">License</a></li>
    <li><a href="#contact">Contact</a></li>
    <li><a href="#acknowledgements">Acknowledgements</a></li>
  </ol>
</details>

## About The Project

Exploratory Data Analysis and Journey in Neurocritical Care is a project that delves deep into the analysis of EEG data to understand brain activity in critical care scenarios.

### What is EEG?

Electroencephalography (EEG) is a non-invasive method used to record electrical activity in the brain. Learn more about EEG [here](#what-is-eeg).

### How Spectrograms are Related to EEG?

Spectrograms play a crucial role in analyzing EEG data. Find out more about their relationship [here](#how-spectrograms-are-related-to-eeg).

### LPD/GPD/LRDA/GRDA Conditions

Explore various brain conditions such as Lateralized Periodic Discharges (LPDs), Generalized Periodic Discharges (GPDs), Lateralized Rhythmic Delta Activity (LRDA), and Generalized Rhythmic Delta Activity (GRDA) [here](#lpd-gpd-lrda-grda-conditions).

## Getting Started

To get a local copy up and running follow these simple steps.

### Prerequisites

This is an example of how to list things you need to use the software and how to install them.

## Installation
Clone the repository 🚀

```bash
git clone https://github.com/ThecoderPinar/HMS-BrainActivity-Analysiss.git
```

## 🚀 Usage

Welcome to the usage section! Here, you'll find examples and code snippets to help you make the most of this project.

### 1. Data Analysis with Jupyter Notebooks

Navigate to the `📓 notebooks` directory to find Jupyter notebooks for in-depth data analysis and visualization.

```bash
cd notebook/
jupyter notebook
  ```
### 2. Exploring EEG Data
Check out the 📂 data directory (please note, actual EEG data is not provided for privacy and ethical reasons). You can replace the placeholder with your own data.

📂 data
 - [ ] ├── train_eegs\1000913311.parquet
 - [ ] ├── train_spectrograms\1000189855.parquet
 - [ ] ├── sample_submission.csv
 - [ ] ├── test.csv
 - [ ] ├── train.csv

### 3. Project Documentation
Explore the 📚 docs directory for comprehensive project documentation, including this README.
```bash
cd docs/
```

### 4. Viewing Outputs
Navigate to the output directories:

📁 out
- [ ]  ├── submission.csv
- [ ]  ├── out_image/
- [ ]  └── out_audio/

## 📓 Notebook

Explore the analysis and visualization of harmful brain activity in the following Jupyter Notebook:

- [`https://github.com/ThecoderPinar/HMS-BrainActivity-Analysiss/blob/main/notebook/hms-eda-harmful-brain-activity.ipynb`](https://github.com/ThecoderPinar/HMS-BrainActivity-Analysiss/blob/main/notebook/hms-eda-harmful-brain-activity.ipynb)

Feel free to open the notebook to dive into the details of our exploratory data analysis journey! 🧠📊

## 🚀 Roadmap

Here's what's coming up for this project:

### 🎉 Version 1.0.0 (Current Release)
- [x] 🚀 Initial release with basic functionalities.
- [x] 📊 Exploratory Data Analysis (EDA) on EEG data.
- [x] 📈 Implement basic data visualization techniques.

### 🌟 Version 1.1.0
- [ ] 🎨 Add advanced visualization features.
- [ ] 📉 Include statistical analysis of EEG patterns.
- [ ] 📘 Improve documentation for better understanding.

### ✨ Version 1.2.0
- [ ] 🤖 Integrate machine learning models for EEG pattern recognition.
- [ ] 🎉 Enhance user interface for better user experience.
- [ ] 🌐 Support for additional EEG datasets.

### 🚧 Version 1.3.0
- [ ] ⏩ Implement real-time EEG data processing.
- [ ] 📊 Provide interactive dashboards for data exploration.
- [ ] 🤝 Collaborate with the community to address user feedback.

### 🔮 Future Releases
- [ ] ☁️ Explore cloud-based EEG data analysis.
- [ ] 📱 Develop mobile applications for on-the-go EEG analysis.
- [ ] 🔄 Continuous improvement based on user feedback and technological advancements.

Feel free to suggest additional features or improvements by opening an issue or reaching out! 🚀

## Contributing

Contributions make the open source community thrive. If you'd like to contribute to this project, follow these steps:
1. Fork the Project
2. Create your Feature Branch (`git checkout -b feature/AmazingFeature`)
3. Commit your Changes (`git commit -m 'Add some AmazingFeature'`)
4. Push to the Branch (`git push origin feature/AmazingFeature`)
5. Open a Pull Request

## License

Distributed under the [Apache License 2.0](LICENSE). See `LICENSE` for more information.

## Contact

If you want to reach out, feel free to contact me:

Pınar Topuz - [piinartp@gmail.com](mailto:piinartp@gmail.com)

Project Link: [https://github.com/QMindSolutions/HMS-BrainActivity-Analysis](https://github.com/QMindSolutions/HMS-BrainActivity-Analysis)

## Acknowledgements

Give credit to the tools, libraries, or resources you used or were inspired by in this project. It's a great way to show appreciation.

* [Tool or Library Name](https://example.com/tool)
* [Another Tool](https://example.com/another-tool)
* [Inspiration Source](https://example.com/inspiration)

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